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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:125625128
NCBI info 125625128 Gene: - Synonym: llmg_2368
SCL: @Intracellular Length 86 COG -
Species: Lactococcus_lactis_cremoris_MG1363 Location 2319420..2319680 Strand: -
Product: hypothetical protein
Sequence:
MRIISNPIAKDGIIIADALNDKRHMGFMFAAAYNSPIFPNSSNLDKTDSGKDRLIITTDEEGIEIFDTMPTSFYYKVSNDTTGLSS


This pseudogene can be concatenated as : 125625129_125625128
Concatenated Sequence:
MKKISANIKKFVGISLILLGTLPILSACGSKESKKSEQSSSSSSIKNNESIQSSSSSSSTSSSSSNSSSSSQEGFGNSSQILSGNYSSLNGTWxMRIISN
PIAKDGIIIADALNDKRHMGFMFAAAYNSPIFPNSSNLDKTDSGKDRLIITTDEEGIEIFDTMPTSFYYKVSNDTTGLSS


Protein clustering result of GI: 125625128
protein GI: 125625128 is in cluster LaCOG01397
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG01397 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG01397
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes
15674067Lactococcus_lactis_lactis_IL1403MeKtSANIKKFVvISLItLGTLTVLtACGSKESKKSEQSSfSSSI-NNkSsQSSSSSnSs
116513040Lactococcus_lactis_cremoris_SK11MKKISANIKKFVgISLILLGTLTVLSACGSKESKKSEQSSsSSSIKNNESiQSSSSSSST
125625129_125625128Lactococcus_lactis_cremoris_MG1363MKKISANIKKFVgISLILLGTLpiLSACGSKESKKSEQSSsSSSIKNNESiQSSSSSSST
 
15674067Lactococcus_lactis_lactis_IL1403StS---SSSStQEGFGdvpQILSGNYSSLNGTWQTADGSTKIILnNGNIIFSpDYeRIIS
116513040Lactococcus_lactis_cremoris_SK11SSS--NSSSSSQEGFGNsSQILSGNYSSLNGTWQTADGTSKIILkNGNIIFSsEYvRIIS
125625129_125625128Lactococcus_lactis_cremoris_MG1363SSSssNSSSSSQEGFGNsSQILSGNYSSLNGTW---------------------xmRIIS
 
15674067Lactococcus_lactis_lactis_IL1403NPvAKDGIvIgDALNDKRHMGFMFAAAhNSPIFPNSSNvDKTDSGKDRLIITTDEEGIEI
116513040Lactococcus_lactis_cremoris_SK11NPIAKDGIIIADALNDKRHMGFMFAAAYNSPIFPNSSNLDKTDSGKDRLIITTDEEGIEI
125625129_125625128Lactococcus_lactis_cremoris_MG1363NPIAKDGIIIADALNDKRHMGFMFAAAYNSPIFPNSSNLDKTDSGKDRLIITTDEEGIEI
 
15674067Lactococcus_lactis_lactis_IL1403FDTMPTaFfYKVSNDiTl---
116513040Lactococcus_lactis_cremoris_SK11FDTMPTSFYYKVSNDTTsLSS
125625129_125625128Lactococcus_lactis_cremoris_MG1363FDTMPTSFYYKVSNDTTgLSS
 
Copyright © 2010 Miaomiao Zhou
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