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Pseudogenes
| Pseudogenes in Enterococcus_faecalis_V583 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 29375116 | Not concatenated | EF0488 | - | - | hypothetical protein | @N-terminally anchored (No CS) | Distant homolog | 86 |
| 29375178 | Not concatenated | EF0564 | - | - | hypothetical protein | @Secretory(released) (with CS) | Distant homolog | 50 |
| 29375186 | Not concatenated | EF0574 | - | - | hypothetical protein | @N-terminally anchored (No CS) | Distant homolog | 34 |
| 29376959 | Not concatenated | EF2465 | - | - | hypothetical protein | @N-terminally anchored (No CS) | Distant homolog | 47 |
| 29376960 | Not concatenated | EF2466 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG00092 | 1511 |
| 29377694 | Not concatenated | EF3251 | - | - | hypothetical protein | @Secretory(released) (with CS) | Distant homolog | 311 |
| Pseudogenes in Lactobacillus_acidophilus_NCFM |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 58336391 | Not concatenated | LBA0040 | - | - | hypothetical protein | @Intracellular | LaCOG00793 | 87 |
| 58336403 | Not concatenated | LBA0053 | - | - | hypothetical protein | @Intracellular | Distant homolog | 72 |
| 58336404 | Not concatenated | LBA0054 | - | - | putative endonuclease-exonuclease-phosphatase family protein | @Intracellular | LaCOG00654 | 237 |
| 999990012 | Not concatenated | LBA0054A | | | | | LaCOG00654 | |
| 58337311 | Not concatenated | LBA1016 | - | - | putative mucus binding protein | @Intracellular | LaCOG03211 | 185 |
| 58337312 | Not concatenated | LBA1017 | - | - | putative mucus binding protein | @Intracellular | LaCOG03211 | 294 |
| 58337313 | Not concatenated | LBA1018 | - | - | putative mucus binding protein | @LPxTG Cell-wall anchored | LaCOG03211 | 346 |
| 58337398 | Not concatenated | LBA1108 | - | - | hypothetical protein | @Secretory(released) (with CS) | Distant homolog | 59 |
| 58337465 | Not concatenated | LBA1182 | - | - | putative signal peptidase | @N-terminally anchored (No CS) | LaCOG01525 | 80 |
| 999990009 | Not concatenated | LBA1182A | | | | | LaCOG01525 | 96 |
| 58337499 | Not concatenated | LBA1218 | - | - | putative mucus binding protein precursor | @Intracellular | LaCOG01470 | 697 |
| 58337500 | Not concatenated | LBA1219 | - | - | putative lipase precursor | @Secretory(released) (with CS) | LaCOG01470 | 425 |
| 58337618 | Not concatenated | LBA1345 | - | - | putative oligopeptide ABC transporter substrate bindingprotein | @Intracellular | Distant homolog | 89 |
| 58337619 | Not concatenated | LBA1346 | oppA | - | oligopeptide ABC transporter substrate binding protein | @Intracellular | LaCOG00248 | 123 |
| 58337620 | Not concatenated | LBA1347 | oppA | - | peptide binding protein | @Secretory(released) (with CS) | LaCOG00248 | 184 |
| 58337624 | Not concatenated | LBA1351 | - | - | lysin | @Intracellular | LaCOG01653 | 249 |
| 58337625 | Not concatenated | LBA1352 | - | - | lysin | @Secretory(released) (with CS) | LaCOG01653 | 155 |
| 58337649 | Not concatenated | LBA1378 | - | - | putative biofilm-associated surface protein | @N-terminally anchored (No CS) | Distant homolog | 66 |
| 58337696 | Not concatenated | LBA1425 | - | - | hypothetical protein | @Intracellular | LaCOG01137 | 231 |
| 999990003 | Not concatenated | LBA1425-N | | | | @N-terminally anchored (No CS) | LaCOG01137 | 59 |
| 58337760 | Not concatenated | LBA1495 | - | - | putative fibrinogen-binding protein | @Secretory(released) (with CS) | Distant homolog | 264 |
| 58337761 | Not concatenated | LBA1496 | - | - | putative fibrinogen-binding protein | @LPxTG Cell-wall anchored | Distant homolog | 991 |
| 58337872 | Not concatenated | LBA1611 | fmtB | - | surface protein | @LPxTG Cell-wall anchored | Distant homolog | 2539 |
| 58337873 | Not concatenated | LBA1612 | - | - | fibrinogen-binding protein | @Secretory(released) (with CS) | Distant homolog | 906 |
| 58337883 | Not concatenated | LBA1623 | - | - | putative transporter | @Intracellular | Distant homolog | 50 |
| 58337884 | Not concatenated | LBA1624 | - | - | putative transporter | @Intracellular | Distant homolog | 45 |
| 58337892 | Not concatenated | LBA1633 | - | - | surface protein | @Intracellular /TMH start AFTER 60 | Distant homolog | 1659 |
| Pseudogenes in Lactobacillus_brevis_ATCC_367 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 116333011 | Not concatenated | LVIS_0341 | - | - | hypothetical protein | @Intracellular | LaCOG02819 | 280 |
| 999990008 | Not concatenated | LVIS_0341-N | | | | @N-terminally anchored (with CS) | LaCOG02819 | 84 |
| 116333159 | Not concatenated | LVIS_0497 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG02044 | 54 |
| 116333160 | Not concatenated | LVIS_0498 | - | - | hypothetical protein | @Intracellular | LaCOG02044 | 458 |
| 999990004 | Not concatenated | LVIS_1559 | | | | @Intracellular | LaCOG02044 | 213 |
| 116334142 | Not concatenated | LVIS_1560 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG02044 | 503 |
| 116334814 | Not concatenated | LVIS_2262 | - | - | hypothetical protein | @Intracellular /TMH start AFTER 60 | LaCOG01741 | 422 |
| 116334815 | Not concatenated | LVIS_2263 | - | - | hypothetical protein | @Intracellular | LaCOG01471 | 141 |
| 116334816 | Not concatenated | LVIS_2264 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG01741 | 122 |
| Pseudogenes in Lactobacillus_casei_ATCC_334 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 116493956 | Not concatenated | LSEI_0392 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG01653 | 50 |
| 116493957 | Not concatenated | LSEI_0393 | - | - | Lyzozyme M1 (1,4-beta-N-acetylmuramidase) | @Intracellular | LaCOG01653 | 254 |
| 116494026 | Not concatenated | LSEI_0465 | - | - | Uncharacterized conserved membrane associated protein | @LPxTG Cell-wall anchored | LaCOG90024 | 1488 |
| 999990016 | Not concatenated | LSEI_0466 | | | | @N-terminally anchored (No CS) | LaCOG90024 | 292 |
| 999990017 | Not concatenated | LSEI_0467 | | | | @N-terminally anchored (No CS) | LaCOG90024 | 420 |
| 116494027 | Not concatenated | LSEI_0468 | - | - | Membrane associated subtilisin-like serine protease | @Intracellular /TMH start AFTER 60 | LaCOG90024 | 1637 |
| 116494151 | Not concatenated | LSEI_0599 | - | - | Lyzozyme M1 (1,4-beta-N-acetylmuramidase) | @Intracellular | LaCOG01653 | 323 |
| 116494164 | Not concatenated | LSEI_0614 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG01871 | 220 |
| 116495955 | Not concatenated | LSEI_2511 | - | - | Predicted outer membrane protein | @Intracellular /TMH start AFTER 60 | LaCOG00092 | 476 |
| 116495956 | Not concatenated | LSEI_2512 | - | - | Predicted outer membrane protein | @Secretory(released) (with CS) | LaCOG00092 | 2209 |
| 116495969 | Not concatenated | LSEI_2538 | - | - | cell surface protein | @Intracellular /TMH start AFTER 60 | LaCOG00915 | 276 |
| 116496112 | Not concatenated | LSEI_2686 | - | - | Alpha-glucosidase, family 31 of glycosyl hydrolase | @LPxTG Cell-wall anchored | LaCOG00488 | 651 |
| 116496113 | Not concatenated | LSEI_2687 | - | - | hypothetical protein | @Secretory(released) (with CS) | Distant homolog | 416 |
| 116496312 | Not concatenated | LSEI_2896 | - | - | Adhesion exoprotein | @Intracellular /TMH start AFTER 60 | LaCOG03211 | 1094 |
| 116496313 | Not concatenated | LSEI_2897 | - | - | Adhesion exoprotein | @N-terminally anchored (No CS) | LaCOG03211 | 676 |
| Pseudogenes in Lactobacillus_casei_BL23 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 191637174 | Not concatenated | LCABL_03560 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG02792 | 244 |
| 191637177 | Not concatenated | LCABL_03590 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG02792 | 293 |
| 191637178 | Not concatenated | LCABL_03600 | fosE | - | Beta-fructosidase | @Intracellular /TMH start AFTER 60 | LaCOG02792 | 493 |
| 191637184 | Not concatenated | LCABL_03660 | - | - | Beta-lactamase class A | @N-terminally anchored (No CS) | LaCOG03439 | 280 |
| 191637185 | Not concatenated | LCABL_03670 | - | - | Lipoprotein, putative | @Intracellular | LaCOG99193 | 156 |
| 191637687 | Not concatenated | LCABL_08720 | pbp1B | - | Bifunctional glycosyltransferase/transpeptidase penicillin-binding protein 1B | @Intracellular | LaCOG00280 | 639 |
| 191637688 | Not concatenated | LCABL_08730 | pbp1B | - | Bifunctional glycosyltransferase/transpeptidase penicillin-binding protein 1B | @N-terminally anchored (No CS) | LaCOG00280 | 342 |
| 191638788 | Not concatenated | LCABL_20190 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG01915 | 39 |
| 191639857 | Not concatenated | LCABL_31160 | - | - | hypothetical protein | @N-terminally anchored (No CS) | Distant homolog | 1303 |
| Pseudogenes in Lactobacillus_delbrueckii_bulgaricus_ATCC11842 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 104773334 | Not concatenated | Ldb0117 | - | - | hypothetical protein | @N-terminally anchored (No CS) | Distant homolog | 206 |
| 104773447 | Not concatenated | Ldb0281 | oppA1II | - | Oligopeptide ABC transporter, substrate binding protein | @Intracellular | LaCOG00248 | 530 |
| 104773974 | Not concatenated | Ldb0956 | pstS | - | Phosphate ABC transporter, phosphate binding protein | @Secretory(released) (with CS) | LaCOG01129 | 280 |
| 104774271 | Not concatenated | Ldb1404 | - | - | hypothetical protein | @LPxTG Cell-wall anchored | Distant homolog | 191 |
| 104774729 | Not concatenated | Ldb2087 | - | - | hypothetical protein | @LPxTG Cell-wall anchored | LaCOG99191 | 79 |
| Pseudogenes in Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 116513326 | Not concatenated | LBUL_0113 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG01536 | 147 |
| 116513328 | Not concatenated | LBUL_0115 | - | - | hypothetical protein | @Intracellular | LaCOG01536 | 311 |
| 999990005 | Not concatenated | LBUL_0198 | | | | @Secretory(released) (with CS) | LaCOG02219 | 162 |
| 116513407 | Not concatenated | LBUL_0199 | - | - | N-acetylmuramoyl-L-alanine amidase | @Intracellular | LaCOG02219 | 374 |
| 116513728 | Not concatenated | LBUL_0560 | - | - | hypothetical protein | @N-terminally anchored (with CS) | Distant homolog | 400 |
| 116513990 | Not concatenated | LBUL_0878 | - | - | hypothetical protein | @Secreted via minor pathways (bacteriocin) (no CS) | LaCOG99090 | 96 |
| 116514196 | Not concatenated | LBUL_1122 | - | - | alpha/beta hydrolase superfamily protein | @Intracellular | LaCOG01137 | 103 |
| 116514215 | Not concatenated | LBUL_1146 | - | - | hypothetical protein | @Intracellular | LaCOG99095 | 182 |
| 116514500 | Not concatenated | LBUL_1475 | - | - | hypothetical protein | @Intracellular | LaCOG02167 | 49 |
| 116514501 | Not concatenated | LBUL_1476 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG02167 | 73 |
| 116514759 | Not concatenated | LBUL_1816 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG00097 | 56 |
| 116514760 | Not concatenated | LBUL_1817 | - | - | DNA-entry nuclease | @Intracellular | LaCOG00097 | 211 |
| 116514764 | Not concatenated | LBUL_1821 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG99139 | 85 |
| 116514860 | Not concatenated | LBUL_1931 | - | - | hypothetical protein | @LPxTG Cell-wall anchored | LaCOG99191 | 101 |
| Pseudogenes in Lactobacillus_fermentum_IFO_3956 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 184154962 | Not concatenated | LAF_0486 | - | - | hypothetical protein | @Intracellular | LaCOG01653 | 387 |
| 999990013 | Not concatenated | LAF_0486N | | | | | LaCOG01653 | |
| 184155503 | Not concatenated | LAF_1027 | - | - | hypotehtical protein | @N-terminally anchored (No CS) | Distant homolog | 512 |
| 184155504 | Not concatenated | LAF_1028 | - | - | hypotehtical protein | @Secretory(released) (with CS) | Distant homolog | 53 |
| Pseudogenes in Lactobacillus_gasseri_ATCC_33323 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 116628820 | Not concatenated | LGAS_0142 | - | - | Adhesion exoprotein | @Secretory(released) (with CS) | LaCOG03211 | 2223 |
| 116628821 | Not concatenated | LGAS_0143 | - | - | Adhesion exoprotein | @LPxTG Cell-wall anchored | LaCOG03211 | 2823 |
| 116629053 | Not concatenated | LGAS_0382 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG03226 | 519 |
| 116629054 | Not concatenated | LGAS_0383 | - | - | hypothetical protein | @Intracellular /TMH start AFTER 60 | LaCOG03226 | 476 |
| Pseudogenes in Lactobacillus_helveticus_DPC_4571 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 161506782 | Not concatenated | lhv_0196 | - | - | DNA polymerase | @Intracellular | LaCOG99064 | 225 |
| 161507031 | Not concatenated | lhv_0496 | - | - | hypothetical protein | @Intracellular /TMH start AFTER 60 | Distant homolog | 200 |
| 99990019 | Not concatenated | lhv_1464 | | | | | LaCOG99219 | |
| 99990020 | Not concatenated | lhv_1465 | | | | | LaCOG99219 | |
| 161507774 | Not concatenated | lhv_1466 | - | - | hypothetical protein | @Intracellular | LaCOG99219 | 265 |
| 161508018 | Not concatenated | lhv_1826 | - | - | hypothetical protein | @Intracellular | LaCOG90004 | 210 |
| Pseudogenes in Lactobacillus_johnsonii_NCC_533 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 42518124 | Not concatenated | LJ0038 | - | - | hypothetical protein | @Lipid anchored | LaCOG01137 | 168 |
| 42518125 | Not concatenated | LJ0039 | - | - | hypothetical protein | @Intracellular | LaCOG01137 | 88 |
| 42519752 | Not concatenated | LJ0573 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG01470 | 155 |
| 42519751 | Not concatenated | LJ0574 | - | - | hypothetical protein | @LPxTG Cell-wall anchored | LaCOG01470 | 1571 |
| 42518833 | Not concatenated | LJ0908 | - | - | hypothetical protein | @Intracellular | LaCOG03110 | 100 |
| 42519444 | Not concatenated | LJ1570 | - | - | hypothetical protein | @Intracellular | LaCOG00749 | 159 |
| Pseudogenes in Lactobacillus_plantarum_WCFS1 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 28377874 | Not concatenated | lp_1081 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG01716 | 318 |
| 28379289 | Not concatenated | lp_2809 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG01816 | 205 |
| 28379744 | Not concatenated | lp_3412 | - | - | extracellular protein | @Secretory(released) (with CS) | LaCOG99255 | 1136 |
| 28379777 | Not concatenated | lp_3454 | - | - | hypothetical protein | @LPxTG Cell-wall anchored | Distant homolog | 92 |
| Pseudogenes in Lactobacillus_reuteri_F275_JGI |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 148544482 | Not concatenated | Lreu_1258 | - | - | cell wall anchor domain-containing protein | @LPxTG Cell-wall anchored | Distant homolog | 745 |
| 148544483 | Not concatenated | Lreu_1259 | - | - | YSIRK Gram-positive signal peptide | @N-terminally anchored (No CS) | Distant homolog | 328 |
| 148544564 | Not concatenated | Lreu_1346 | - | - | dextransucrase | @Intracellular | LaCOG90016 | 1363 |
| 999990024 | Not concatenated | Lreu_1347 | | | | @N-terminally anchored (with CS) | Distant homolog | |
| 148544572 | Not concatenated | Lreu_1355 | - | - | hypothetical protein | @Secretory(released) (with CS) | Distant homolog | 532 |
| 148544873 | Not concatenated | Lreu_1667 | - | - | alpha/beta fold family hydrolase-like protein | @Intracellular | LaCOG00073 | 283 |
| Pseudogenes in Lactobacillus_reuteri_F275_Kitasato |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 184153847 | Not concatenated | LAR_1192 | - | - | hypothetical protein | @LPxTG Cell-wall anchored | Distant homolog | 745 |
| 184153848 | Not concatenated | LAR_1193 | - | - | hypothetical protein | @N-terminally anchored (No CS) | Distant homolog | 328 |
| 184154210 | Not concatenated | LAR_1555 | - | - | hypothetical protein | @Intracellular | LaCOG00073 | 297 |
| Pseudogenes in Lactobacillus_sakei_23K |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 81427703 | Not concatenated | LSA0090 | - | - | Putative extracellular arylsulfate sulfotransferase (N-terminal fragment), authentic frameshift | @N-terminally anchored (No CS) | LaCOG01763 | 431 |
| 81427704 | Not concatenated | LSA0091 | - | - | Putative extracellular arylsulfate sulfotransferase (C-terminal fragment), authentic frameshift | @Intracellular | LaCOG01763 | 122 |
| 81427729 | Not concatenated | LSA0116 | - | - | hypothetical protein | @Intracellular | LaCOG00092 | 83 |
| 81427730 | Not concatenated | LSA0118 | - | - | hypothetical protein | @Intracellular | LaCOG00092 | 733 |
| 81427784 | Not concatenated | LSA0174 | - | - | hypothetical protein | @N-terminally anchored (with CS) | LaCOG00915 | 90 |
| 81427821 | Not concatenated | LSA0211 | - | - | Hypothetical cell surface protein precursor | @Intracellular /TMH start AFTER 60 | LaCOG02935 | 154 |
| 81427822 | Not concatenated | LSA0212 | - | - | Hypothetical cell surface protein precursor | @Intracellular | LaCOG02935 | 1044 |
| 81427943 | Not concatenated | LSA0329 | - | - | Putative DNA-entry nuclease precursor (N-terminal fragment), authentic frameshift | @Lipid anchored | LaCOG00097 | 178 |
| 81427944 | Not concatenated | LSA0330 | - | - | Putative DNA-entry nuclease precursor (C-terminal fragment), authentic framesshift | @Intracellular | LaCOG00097 | 71 |
| 81428894 | Not concatenated | LSA1285 | - | - | Hypothetical cell surface protein precursor (C-terminal fragment), truncated | @Intracellular /TMH start AFTER 60 | LaCOG00915 | 193 |
| 81428897 | Not concatenated | LSA1286_c | - | - | Hypothetical cell surface protein precursor (N-terminal fragment), truncated | @Secretory(released) (with CS) | LaCOG00915 | 158 |
| 81429203 | Not concatenated | LSA1591 | srtA2 | - | Putative surface protein transpeptidase 2 (Sortase 2) | @Intracellular | LaCOG00749 | 198 |
| 81429340 | Not concatenated | LSA1727 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG00915 | 82 |
| 81429344 | Not concatenated | LSA1731 | - | - | Hypothetical cell surface protein precursor | @Secretory(released) (with CS) | LaCOG02935 | 1768 |
| 999990021 | Not concatenated | LSA1818 | | | | @N-terminally anchored (No CS) | LaCOG00915 | |
| Pseudogenes in Lactobacillus_salivarius_UCC118 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 90962560 | Not concatenated | LSL_1591 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG02567 | 228 |
| Pseudogenes in Lactococcus_lactis_cremoris_MG1363 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 125622891 | Not concatenated | llmg_0009 | - | - | putative secreted protein | @Secretory(released) (with CS) | LaCOG01500 | 233 |
| 125622892 | Not concatenated | llmg_0010 | - | - | hypothetical protein | @Intracellular | LaCOG01500 | 63 |
| 125622937 | Not concatenated | llmg_0056 | - | - | hypothetical protein | @Intracellular | LaCOG01138 | 260 |
| 125623316 | Not concatenated | llmg_0449 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG01676 | 95 |
| 125623317 | Not concatenated | llmg_0450 | - | - | hypothetical protein | @Intracellular | LaCOG01676 | 217 |
| 125623483 | Not concatenated | llmg_0623 | abiP | - | abortive phage resistance protein abiP | @N-terminally anchored (No CS) | LaCOG99215 | 226 |
| 125623560 | Not concatenated | llmg_0704 | - | - | hypothetical protein | @Intracellular | LaCOG99184 | 67 |
| 999990031 | Not concatenated | llmg_0923A | | | pseudogene cscC, N-terminal fragment | @N-terminally anchored (No CS) | LaCOG01033 | |
| 999990032 | Not concatenated | llmg_0923b | | | pseudogene cscC, C-terminal fragment | @N-terminally anchored (No CS) | LaCOG01033 | |
| 125623765 | Not concatenated | llmg_0924 | - | - | hypothetical protein | @Intracellular /TMH start AFTER 60 | LaCOG00915 | 353 |
| 125623804 | Not concatenated | llmg_0965 | - | - | hypothetical protein | @Intracellular | LaCOG02627 | 229 |
| 999990010 | Not concatenated | llmg_0965A | | | | | LaCOG02627 | 87 |
| 125623926 | Not concatenated | llmg_1095 | - | - | hypothetical protein | @Intracellular | LaCOG02581 | 247 |
| 125623960 | Not concatenated | llmg_1129 | - | - | cell wall surface anchor family protein | @LPxTG Cell-wall anchored | LaCOG00894 | 191 |
| 125623998 | Not concatenated | llmg_1168 | - | - | putative polysaccharide deacetylase | @Intracellular | LaCOG00196 | 208 |
| 125624030 | Not concatenated | llmg_1201 | - | - | hypothetical protein | @Intracellular | LaCOG01500 | 115 |
| 125624244 | Not concatenated | llmg_1433 | - | - | putative secreted protein | @Intracellular | LaCOG99253 | 766 |
| 125624246 | Not concatenated | llmg_1435 | - | - | putative secreted protein | @Secretory(released) (with CS) | LaCOG00915 | 152 |
| 125624403 | Not concatenated | llmg_1602 | - | - | putative transcriptional regulator | @Intracellular | LaCOG02514 | 276 |
| 125624493 | Not concatenated | llmg_1698 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG02406 | 505 |
| 125625128 | Not concatenated | llmg_2368 | - | - | hypothetical protein | @Intracellular | LaCOG01397 | 86 |
| 125625129 | Not concatenated | llmg_2369 | - | - | hypothetical secreted protein predicted by Glimmer/Critica | @Lipid anchored | Distant homolog | 93 |
| Pseudogenes in Lactococcus_lactis_cremoris_SK11 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 116510870 | Not concatenated | LACR_0035 | - | - | hypothetical protein | @Lipid anchored | LaCOG02692 | 100 |
| 116510980 | Not concatenated | LACR_0154 | csc WxL | - | cell surface protein , pseudogene, frameshift at N-term | @Intracellular | LaCOG01034 | 157 |
| 116511102 | Not concatenated | LACR_0285 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG99253 | 35 |
| 116511272 | Not concatenated | LACR_0463 | - | - | hypothetical protein | @Intracellular | LaCOG02426 | 178 |
| 116511523 | Not concatenated | LACR_0758 | - | - | Diadenosine tetraphosphatase related serine/threonine protein phosphatase | @N-terminally anchored (No CS) | LaCOG02492 | 182 |
| 116511565 | Not concatenated | LACR_0803 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG03062 | 468 |
| 116511569 | Not concatenated | LACR_0809 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG02496 | 132 |
| 999990011 | Not concatenated | LACR_0810 | | | | | LaCOG02496 | 91 |
| 116511736 | Not concatenated | LACR_0988 | - | - | hypothetical protein | @Lipid anchored | LaCOG00633 | 110 |
| 116511745 | Not concatenated | LACR_0999 | - | - | Transcriptional regulator | @N-terminally anchored (No CS) | LaCOG02514 | 219 |
| 999990006 | Not concatenated | LACR_1000 | | | | @Intracellular | LaCOG02514 | 88 |
| 116511967 | Not concatenated | LACR_1231 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG99253 | 81 |
| 116512150 | Not concatenated | LACR_1432 | - | - | Endoglucanase Y | @Intracellular | LaCOG02303 | 377 |
| 116512203 | Not concatenated | LACR_1488 | - | - | pseudogene cscA | @N-terminally anchored (No CS) | LACOG00915 | 68 |
| 116512224 | Not concatenated | LACR_1510 | - | - | hypothetical protein | @Intracellular | LaCOG01158 | 94 |
| 116512354 | Not concatenated | LACR_1651 | - | - | hypothetical protein | @Intracellular | LaCOG02620 | 136 |
| 116512384 | Not concatenated | LACR_1682 | - | - | cell surface protein , pseudogene, C-terminal frameshift | @Secretory(released) (with CS) | LaCOG00915 | 333 |
| 116512385 | Not concatenated | LACR_1683 | - | - | hypothetical protein | @Intracellular | LaCOG01033 | 687 |
| 116512388 | Not concatenated | LACR_1686 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG01033 | 985 |
| 116512633 | Not concatenated | LACR_1944 | - | - | DNA uptake protein related DNA-binding protein | @Intracellular | LaCOG01177 | 200 |
| 116512704 | Not concatenated | LACR_2017 | - | - | hypothetical protein | @Lipid anchored | LaCOG01216 | 106 |
| 116512706 | Not concatenated | LACR_2019 | - | - | hypothetical protein | @Intracellular | LaCOG01216 | 57 |
| 116512881 | Not concatenated | LACR_2219 | - | - | hypothetical protein | @Intracellular | LaCOG99152 | 161 |
| 116512894 | Not concatenated | LACR_2232 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG03045 | 233 |
| 116512967 | Not concatenated | LACR_2305 | - | - | hypothetical protein | @Intracellular | LaCOG02700 | 129 |
| 116513130 | Not concatenated | LACR_2489 | - | - | hypothetical protein | @Intracellular | LaCOG01471 | 172 |
| Pseudogenes in Lactococcus_lactis_lactis_IL1403 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 15672867 | Not concatenated | L108747 | yjaH | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG00320 | 114 |
| 15672868 | Not concatenated | L109013 | yjaI | - | hypothetical protein | @Intracellular | LaCOG00320 | 99 |
| 15672869 | Not concatenated | L109379 | yjaJ | - | transcription regulator | @Intracellular | LaCOG00320 | 227 |
| 15673473 | Not concatenated | L121794 | ypcC | - | hypothetical protein | @Intracellular | LaCOG02614 | 342 |
| 15673474 | Not concatenated | L122924 | ypcD | - | endo-beta-N-acetylglucosaminidase | @Lipid anchored | LaCOG02614 | 546 |
| 15672889 | Not concatenated | L131027 | yjdB | - | hypothetical protein | @Intracellular | LaCOG00633 | 201 |
| 15673675 | Not concatenated | L131958 | yrdB | - | hypothetical protein | @C-terminally anchored (with CS) | LaCOG00885 | 204 |
| 15673284 | Not concatenated | L136652 | yndG | - | metal ABC transporter substrate binding protein | @Intracellular | LaCOG00887 | 334 |
| 15673559 | Not concatenated | L18033 | yqbI | - | hypothetical protein | @Intracellular /TMH start AFTER 60 | LaCOG00915 | 259 |
| 15673560 | Not concatenated | L18831 | yqbJ | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG00915 | 124 |
| 15673335 | Not concatenated | L190756 | ynjB | - | hypothetical protein,pseudogene cscA | @N-terminally anchored (No CS) | LACOG00915 | 108 |
| 15673336 | Not concatenated | L191051 | ynjC | - | hypothetical protein,pseudogene cscA | @Secretory(released) (with CS) | LaCOG00915 | 289 |
| 15673180 | Not concatenated | L19387 | cscD | - | hypothetical protein | @LPxTG Cell-wall anchored | Distant homolog | 105 |
| 30024052 | Not concatenated | L200066 | yreF | - | hypothetical protein | @LPxTG Cell-wall anchored | LaCOG00885 | 210 |
| 15673182 | Not concatenated | L20255 | ymcB | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG00915 | 215 |
| 15673183 | Not concatenated | L20773 | ymcC | - | hypothetical protein | @Intracellular /TMH start AFTER 60 | LaCOG00915 | 187 |
| 15673185 | Not concatenated | L22960 | ymcF | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG00885 | 338 |
| 999990002 | Not concatenated | L22960-C | | | pseudogene start ATT (Ile) | @LPxTG Cell-wall anchored | LaCOG00885 | 169 |
| 15673564 | Not concatenated | L25903 | yqcC | - | hypothetical protein ,pseudogene cscB | @Intracellular | LaCOG01034 | 143 |
| 999990029 | Not concatenated | L25903A | | | pseudogene cscB | @N-terminally anchored (No CS) | Distant homolog | |
| 15673566 | Not concatenated | L27628 | yqcE | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG02625 | 31 |
| 999990007 | Not concatenated | L27628-N | | | pseudogene | @Secretory(released) (with CS) | LaCOG02625 | 43 |
| 15672066 | Not concatenated | L88635 | yaiG | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG00047 | 72 |
| Pseudogenes in Leuconostoc_mesenteroides_ATCC_8293 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 116617450 | Not concatenated | LEUM_0324 | - | - | Muramidase | @N-terminally anchored (No CS) | LaCOG00356 | 436 |
| 116617451 | Not concatenated | LEUM_0325 | - | - | Cell wall-associated hydrolase | @Intracellular | LaCOG00646 | 131 |
| 116617468 | Not concatenated | LEUM_0343 | - | - | ABC-type oligopeptide transport system, periplasmic component | @Intracellular | LaCOG00248 | 518 |
| Pseudogenes in Oenococcus_oeni_PSU-1 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 116490646 | Not concatenated | OEOE_0582 | - | - | hypothetical protein | @N-terminally anchored (with CS) | LaCOG03165 | 73 |
| 116490647 | Not concatenated | OEOE_0583 | - | - | hypothetical protein | @Intracellular | LaCOG03165 | 146 |
| 116490656 | Not concatenated | OEOE_0593 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG03180 | 127 |
| 116490746 | Not concatenated | OEOE_0689 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG00915 | 166 |
| 116490747 | Not concatenated | OEOE_0690 | - | - | cell surface protein | @Intracellular /TMH start AFTER 60 | LaCOG00915 | 164 |
| 116490993 | Not concatenated | OEOE_0961 | - | - | hypothetical protein | @N-terminally anchored (No CS) | LaCOG01177 | 115 |
| 116490994 | Not concatenated | OEOE_0962 | - | - | DNA uptake protein or related DNA-binding protein | @Intracellular | LaCOG01177 | 109 |
| 116491077 | Not concatenated | OEOE_1054 | - | - | ABC-type metal ion transport system, periplasmic component/surface antigen | @N-terminally anchored (No CS) | LaCOG01803 | 163 |
| 116491088 | Not concatenated | OEOE_1065 | - | - | D-alanyl-D-alanine carboxypeptidase | @Intracellular | LaCOG00659 | 219 |
| 116491488 | Not concatenated | OEOE_1508 | - | - | Adhesion exoprotein | @LPxTG Cell-wall anchored | LaCOG00092 | 771 |
| 116491489 | Not concatenated | OEOE_1509 | - | - | Predicted outer membrane protein | @Intracellular | LaCOG00092 | 495 |
| 116491490 | Not concatenated | OEOE_1510 | - | - | Predicted outer membrane protein | @Secretory(released) (with CS) | LaCOG00092 | 790 |
| 116491491 | Not concatenated | OEOE_1511 | - | - | hypothetical protein,cscC, pseudogene, C-term truncated | @N-terminally anchored (No CS) | LaCOG03173 | 379 |
| Pseudogenes in Pediococcus_pentosaceus_ATCC_25745 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 116491877 | Not concatenated | PEPE_0059 | - | - | Subtilisin-like serine protease | @N-terminally anchored (No CS) | Distant homolog | 2334 |
| 116491918 | Not concatenated | PEPE_0101 | - | - | alpha/beta hydrolase superfamily protein | @Intracellular | LaCOG01137 | 275 |
| 116492811 | Not concatenated | PEPE_1048 | - | - | Possible cell surface protein | @Intracellular | LaCOG01470 | 717 |
| 116492812 | Not concatenated | PEPE_1049 | - | - | hypothetical protein | @Secretory(released) (with CS) | LaCOG01470 | 412 |
| Pseudogenes in Streptococcus_thermophilus_CNRZ1066 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 55822068 | Not concatenated | str0078 | - | - | D-alanyl-D-alanine carboxypeptidase, truncated | @Intracellular | LaCOG01530 | 189 |
| 55822069 | Not concatenated | str0079 | - | - | D-alanyl-D-alanine carboxypeptidase, truncated | @N-terminally anchored (No CS) | LaCOG01530 | 131 |
| 55822157 | Not concatenated | str0169 | - | - | dipeptide/oligopeptide ABC transporter substrate binding protein, truncated | @Lipid anchored | LaCOG00248 | 68 |
| 55822158 | Not concatenated | str0170 | - | - | dipeptide/oligopeptide ABC transporter substrate binding protein, truncated | @Intracellular | LaCOG00248 | 256 |
| 55822894 | Not concatenated | str0937 | - | - | hypothetical protein | @Intracellular | LaCOG01137 | 59 |
| 55822895 | Not concatenated | str0938 | - | - | hypothetical protein | @Intracellular | LaCOG01137 | 149 |
| 55823195 | Not concatenated | str1277 | - | - | sortase, truncated | @Intracellular | LaCOG00749 | 125 |
| 55823196 | Not concatenated | str1278 | - | - | sortase, truncated | @N-terminally anchored (No CS) | LaCOG00749 | 123 |
| 55823353 | Not concatenated | str1442 | - | - | oligopeptide ABC transporter substrate-binding protein, truncated | @Intracellular | LaCOG00248 | 272 |
| 55823354 | Not concatenated | str1443 | - | - | oligopeptide ABC transporter substrate-binding protein, truncated | @Lipid anchored | LaCOG00248 | 305 |
| 55823438 | Not concatenated | str1533 | - | - | SPFH domain/Band 7 family protein | @Intracellular | LaCOG00421 | 249 |
| 55823583 | Not concatenated | str1689 | - | - | peptide ABC transporter, truncated | @Intracellular | LaCOG00047 | 301 |
| 55823584 | Not concatenated | str1690 | - | - | peptide ABC transporter accessory protein, truncated | @Secretory(released) (with CS) | LaCOG00047 | 111 |
| 99990018 | Not concatenated | str1720A | | | | | LaCOG99032 | |
| Pseudogenes in Streptococcus_thermophilus_LMD-9 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 116627422 | Not concatenated | STER_0575 | - | - | Possible cell surface protein | @LPxTG Cell-wall anchored | Distant homolog | 94 |
| 116627680 | Not concatenated | STER_0865 | - | - | hypothetical protein | @Intracellular | LaCOG03032 | 84 |
| 116628215 | Not concatenated | STER_1479 | - | - | septation ring formation regulator EzrA | @Intracellular | LaCOG01448 | 531 |
| 116628650 | Not concatenated | STER_1968 | - | - | hypothetical protein | @Intracellular | LaCOG03364 | 251 |
| Pseudogenes in Streptococcus_thermophilus_LMG_18311 |
|---|
| GI | Concatenated | Synonym | Gene | Code | Product | Subcellular localization manner | LACOG | Length |
|---|
| 55820180 | Not concatenated | stu0078 | - | - | D-alanyl-D-alanine carboxypeptidase, truncated | @Intracellular | LaCOG01530 | 273 |
| 55820181 | Not concatenated | stu0079 | - | - | D-alanyl-D-alanine carboxypeptidase, truncated | @Intracellular | LaCOG01530 | 55 |
| 55820241 | Not concatenated | stu0143 | - | - | hypothetical protein | @LPxTG Cell-wall anchored | Distant homolog | 129 |
| 55820267 | Not concatenated | stu0169 | - | - | oligopeptide ABC uptake transporter substrate binding protein, truncated | @Lipid anchored | LaCOG00248 | 68 |
| 55820268 | Not concatenated | stu0170 | - | - | oligopeptide ABC uptake transporter substrate binding protein, truncated | @Intracellular | LaCOG00248 | 284 |
| 55820911 | Not concatenated | stu0869 | mur2 | - | peptidoglycan hydrolase | @Intracellular | LaCOG00186 | 159 |
| 999990001 | Not concatenated | stu0869-N | | | pseudogene | @N-terminally anchored (No CS) | LaCOG00186 | 77 |
| 55820975 | Not concatenated | stu0937 | - | - | hypothetical protein | @Intracellular | LaCOG01137 | 59 |
| 55820976 | Not concatenated | stu0938 | - | - | hypothetical protein | @Intracellular | LaCOG01137 | 149 |
| 55821118 | Not concatenated | stu1106 | - | - | exopolysaccharide biosynthesis protein, truncated | @Intracellular | LaCOG01742 | 139 |
| 55821282 | Not concatenated | stu1277 | - | - | sortase, truncated | @Intracellular | LaCOG00749 | 125 |
| 55821283 | Not concatenated | stu1278 | - | - | sortase, truncated | @N-terminally anchored (No CS) | LaCOG00749 | 123 |
| 55821509 | Not concatenated | stu1533 | - | - | conserved hypothetical protein, SPFH domain/Band 7 family protein, truncated | @Intracellular | LaCOG00421 | 172 |
| 55821663 | Not concatenated | stu1689 | - | - | bacteriocin ABC exporter accessory protein, truncated | @Intracellular | LaCOG00047 | 301 |
| 55821664 | Not concatenated | stu1690 | - | - | bacteriocin ABC exporter accessory protein, truncated | @Secretory(released) (with CS) | LaCOG00047 | 111 |
|
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