LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria
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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
Show all LaCOGs
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Domain Search
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Protein Domain Search
Search by known PFAM domain function or PFAM accession code.
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PF00013 (KH domain)
PF00041 (Fibronectin type III domain)
PF00056 (lactate/malate dehydrogenase, NAD binding domain)
PF00060 (Ligand-gated ion channel)
PF00068 (Phospholipase A2)
PF00070 (Pyridine nucleotide-disulphide oxidoreductase)
PF00082 (Subtilase family)
PF00089 (Trypsin)
PF00092 (von Willebrand factor type A domain)
PF00128 (Alpha amylase, catalytic domain)
PF00144 (Beta-lactamase)
PF00149 (Calcineurin-like phosphoesterase)
PF00160 (Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD)
PF00188 (SCP-like extracellular protein)
PF00364 (Biotin-requiring enzyme)
PF00413 (Matrixin)
PF00430 (ATP synthase B/B' CF(0))
PF00496 (Bacterial extracellular solute-binding proteins, family 5 Middle)
PF00497 (Bacterial extracellular solute-binding proteins, family 3)
PF00529 (HlyD family secretion protein)
PF00532 (Periplasmic binding proteins and sugar binding domain of the LacI family)
PF00560 (Leucine Rich Repeat)
PF00561 (alpha/beta hydrolase fold)
PF00563 (EAL domain)
PF00581 (Rhodanese-like domain)
PF00584 (SecE/Sec61-gamma subunits of protein translocation complex)
PF00595 (PDZ domain (Also known as DHR or GLGF))
PF00633 (Helix-hairpin-helix motif)
PF00639 (PPIC-type PPIASE domain)
PF00657 (GDSL-like Lipase/Acylhydrolase)
PF00704 (Glycosyl hydrolases family 18)
PF00717 (Peptidase S24-like)
PF00728 (Glycosyl hydrolase family 20, catalytic domain)
PF00746 (Gram positive anchor)
PF00754 (F5/8 type C domain)
PF00768 (D-alanyl-D-alanine carboxypeptidase)
PF00801 (PKD domain)
PF00877 (NlpC/P60 family)
PF00905 (Penicillin binding protein transpeptidase domain)
PF00912 (Transglycosylase)
PF00975 (Thioesterase domain)
PF00984 (UDP-glucose/GDP-mannose dehydrogenase family, central domain)
PF01094 (Receptor family ligand binding region)
PF01145 (SPFH domain / Band 7 family)
PF01183 (Glycosyl hydrolases family 25)
PF01223 (DNA/RNA non-specific endonuclease)
PF01270 (Glycosyl hydrolases family 8)
PF01297 (Periplasmic solute binding protein family)
PF01331 (mRNA capping enzyme, catalytic domain)
PF01433 (Peptidase family M1)
PF01471 (Putative peptidoglycan binding domain)
PF01473 (Putative cell wall binding repeat)
PF01476 (LysM domain)
PF01494 (FAD binding domain)
PF01497 (Periplasmic binding protein)
PF01510 (N-acetylmuramoyl-L-alanine amidase)
PF01520 (N-acetylmuramoyl-L-alanine amidase)
PF01522 (Polysaccharide deacetylase)
PF01547 (Bacterial extracellular solute-binding protein)
PF01721 (Class II bacteriocin)
PF01832 (Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase)
PF01835 (Alpha-2-macroglobulin family N-terminal region)
PF01966 (HD domain)
PF02129 (X-Pro dipeptidyl-peptidase (S15 family))
PF02225 (PA domain)
PF02324 (Glycosyl hydrolase family 70)
PF02368 (Bacterial Ig-like domain (group 2))
PF02369 (Bacterial Ig-like domain (group 1))
PF02397 (Bacterial sugar transferase)
PF02416 (mttA/Hcf106 family)
PF02424 (ApbE family)
PF02435 (Levansucrase/Invertase)
PF02493 (MORN repeat)
PF02557 (D-alanyl-D-alanine carboxypeptidase)
PF02608 (Basic membrane protein)
PF02618 (Aminodeoxychorismate lyase)
PF02698 (DUF218 domain)
PF02699 (Preprotein translocase subunit)
PF02839 (Carbohydrate binding domain)
PF02872 (5'-nucleotidase, C-terminal domain)
PF02948 (Amelogenin)
PF03009 (Glycerophosphoryl diester phosphodiesterase family)
PF03067 (Chitin binding domain)
PF03180 (NLPA lipoprotein)
PF03217 (Bacterial surface layer protein)
PF03250 (Tropomodulin)
PF03372 (Endonuclease/Exonuclease/phosphatase family)
PF03382 (Mycoplasma protein of unknown function, DUF285)
PF03412 (Peptidase C39 family)
PF03413 (Peptidase propeptide and YPEB domain)
PF03572 (Peptidase family S41)
PF03644 (Glycosyl hydrolase family 85)
PF03672 (Uncharacterised protein family (UPF0154))
PF03717 (Penicillin-binding Protein dimerisation domain)
PF03720 (UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain)
PF03721 (UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain)
PF03734 (Ykud domain)
PF03748 (Flagellar basal body-associated protein FliL)
PF03793 (PASTA domain)
PF03799 (Cell division protein FtsQ)
PF03807 (NADP oxidoreductase coenzyme F420-dependent)
PF03816 (Cell envelope-related transcriptional attenuator domain)
PF03923 (Uncharacterized lipoprotein)
PF04011 (LemA family)
PF04069 (Substrate binding domain of ABC-type glycine betaine transport system)
PF04085 (rod shape-determining protein MreC)
PF04203 (Sortase family)
PF04205 (FMN-binding domain)
PF04392 (ABC transporter substrate binding protein)
PF04508 (Viral A-type inclusion protein repeat)
PF04650 (YSIRK type signal peptide)
PF04886 (PT repeat)
PF04914 (DltD C-terminal region)
PF04915 (DltD N-terminal region)
PF04918 (DltD central region)
PF04977 (Septum formation initiator)
PF05031 (Iron Transport-associated domain)
PF05170 (AsmA family)
PF05223 (NTF2-like N-terminal transpeptidase domain)
PF05257 (CHAP domain)
PF05345 (Putative Ig domain)
PF05737 (Collagen binding domain)
PF05738 (Cna protein B-type domain)
PF05935 (Arylsulfotransferase (ASST))
PF06004 (Bacterial protein of unknown function (DUF903))
PF06028 (Alpha/beta hydrolase of unknown function (DUF915))
PF06030 (Bacterial protein of unknown function (DUF916))
PF06100 (Streptococcal 67 kDa myosin-cross-reactive antigen like family)
PF06103 (Bacterial protein of unknown function (DUF948))
PF06160 (Septation ring formation regulator, EzrA)
PF06207 (Protein of unknown function (DUF1002))
PF06280 (Domain of Unknown Function (DUF1034))
PF06347 (Bacterial SH3 domain)
PF06458 (MucBP domain)
PF06486 (Protein of unknown function (DUF1093))
PF06488 (Lactococcus lactis bacteriophage major structural protein)
PF06725 (3D domain)
PF06737 (Transglycosylase-like domain)
PF07009 (Protein of unknown function (DUF1312))
PF07423 (Protein of unknown function (DUF1510))
PF07435 (YycH protein)
PF07523 (Bacterial Ig-like domain (group 3))
PF07532 (Bacterial Ig-like domain (group 4))
PF07537 (CamS sex pheromone cAM373 precursor)
PF07538 (Clostridial hydrophobic W)
PF07553 (Domain of Unknown Function (DUF1535))
PF07554 (Uncharacterised Sugar-binding Domain)
PF07943 (Penicillin-binding protein 5, C-terminal domain)
PF07949 (YbbR-like protein)
PF07963 (Prokaryotic N-terminal methylation motif)
PF08230 (Cpl-7 lysozyme C-terminal domain)
PF08239 (Bacterial SH3 domain)
PF08428 (Rib/alpha-like repeat)
PF08460 (Bacterial SH3 domain)
PF08478 (POTRA domain, FtsQ-type)
PF08668 (HDOD domain)
PF09084 (NMT1/THI5 like)
PF09223 (YodA)
PF09375 (Imelysin)
PF09648 (YycH protein)
PF09682 (Phage holin protein (Holin_LLH))
PF09716 (Malarial early transcribed membrane protein (ETRAMP))
PF09911 (Uncharacterized protein conserved in bacteria (DUF2140))
PF10112 (5-bromo-4-chloroindolyl phosphate hydrolysis protein)
PF10502 (Peptidase S26)
PF10531 (SLBB domain)
Search by PFAM domain description
Choose
3D domain
5'-nucleotidase, C-terminal domain
5-bromo-4-chloroindolyl phosphate hydrolysis protein
ABC transporter substrate binding protein
ATP synthase B/B' CF(0)
Alpha amylase, catalytic domain
Alpha-2-macroglobulin family N-terminal region
Alpha/beta hydrolase of unknown function (DUF915)
Amelogenin
Aminodeoxychorismate lyase
ApbE family
Arylsulfotransferase (ASST)
AsmA family
Bacterial Ig-like domain (group 1)
Bacterial Ig-like domain (group 2)
Bacterial Ig-like domain (group 3)
Bacterial Ig-like domain (group 4)
Bacterial SH3 domain
Bacterial SH3 domain
Bacterial SH3 domain
Bacterial extracellular solute-binding protein
Bacterial extracellular solute-binding proteins, family 3
Bacterial extracellular solute-binding proteins, family 5 Middle
Bacterial protein of unknown function (DUF903)
Bacterial protein of unknown function (DUF916)
Bacterial protein of unknown function (DUF948)
Bacterial sugar transferase
Bacterial surface layer protein
Basic membrane protein
Beta-lactamase
Biotin-requiring enzyme
CHAP domain
Calcineurin-like phosphoesterase
CamS sex pheromone cAM373 precursor
Carbohydrate binding domain
Cell division protein FtsQ
Cell envelope-related transcriptional attenuator domain
Chitin binding domain
Class II bacteriocin
Clostridial hydrophobic W
Cna protein B-type domain
Collagen binding domain
Cpl-7 lysozyme C-terminal domain
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
D-alanyl-D-alanine carboxypeptidase
D-alanyl-D-alanine carboxypeptidase
DNA/RNA non-specific endonuclease
DUF218 domain
DltD C-terminal region
DltD N-terminal region
DltD central region
Domain of Unknown Function (DUF1034)
Domain of Unknown Function (DUF1535)
EAL domain
Endonuclease/Exonuclease/phosphatase family
F5/8 type C domain
FAD binding domain
FMN-binding domain
Fibronectin type III domain
Flagellar basal body-associated protein FliL
GDSL-like Lipase/Acylhydrolase
Glycerophosphoryl diester phosphodiesterase family
Glycosyl hydrolase family 20, catalytic domain
Glycosyl hydrolase family 70
Glycosyl hydrolase family 85
Glycosyl hydrolases family 18
Glycosyl hydrolases family 25
Glycosyl hydrolases family 8
Gram positive anchor
HD domain
HDOD domain
Helix-hairpin-helix motif
HlyD family secretion protein
Imelysin
Iron Transport-associated domain
KH domain
Lactococcus lactis bacteriophage major structural protein
LemA family
Leucine Rich Repeat
Levansucrase/Invertase
Ligand-gated ion channel
LysM domain
MORN repeat
Malarial early transcribed membrane protein (ETRAMP)
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
Matrixin
MucBP domain
Mycoplasma protein of unknown function, DUF285
N-acetylmuramoyl-L-alanine amidase
N-acetylmuramoyl-L-alanine amidase
NADP oxidoreductase coenzyme F420-dependent
NLPA lipoprotein
NMT1/THI5 like
NTF2-like N-terminal transpeptidase domain
NlpC/P60 family
PA domain
PASTA domain
PDZ domain (Also known as DHR or GLGF)
PKD domain
POTRA domain, FtsQ-type
PPIC-type PPIASE domain
PT repeat
Penicillin binding protein transpeptidase domain
Penicillin-binding Protein dimerisation domain
Penicillin-binding protein 5, C-terminal domain
Peptidase C39 family
Peptidase S24-like
Peptidase S26
Peptidase family M1
Peptidase family S41
Peptidase propeptide and YPEB domain
Periplasmic binding protein
Periplasmic binding proteins and sugar binding domain of the LacI family
Periplasmic solute binding protein family
Phage holin protein (Holin_LLH)
Phospholipase A2
Polysaccharide deacetylase
Preprotein translocase subunit
Prokaryotic N-terminal methylation motif
Protein of unknown function (DUF1002)
Protein of unknown function (DUF1093)
Protein of unknown function (DUF1312)
Protein of unknown function (DUF1510)
Putative Ig domain
Putative cell wall binding repeat
Putative peptidoglycan binding domain
Pyridine nucleotide-disulphide oxidoreductase
Receptor family ligand binding region
Rhodanese-like domain
Rib/alpha-like repeat
SCP-like extracellular protein
SLBB domain
SPFH domain / Band 7 family
SecE/Sec61-gamma subunits of protein translocation complex
Septation ring formation regulator, EzrA
Septum formation initiator
Sortase family
Streptococcal 67 kDa myosin-cross-reactive antigen like family
Substrate binding domain of ABC-type glycine betaine transport system
Subtilase family
Thioesterase domain
Transglycosylase
Transglycosylase-like domain
Tropomodulin
Trypsin
UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
UDP-glucose/GDP-mannose dehydrogenase family, central domain
Uncharacterised Sugar-binding Domain
Uncharacterised protein family (UPF0154)
Uncharacterized lipoprotein
Uncharacterized protein conserved in bacteria (DUF2140)
Viral A-type inclusion protein repeat
X-Pro dipeptidyl-peptidase (S15 family)
YSIRK type signal peptide
YbbR-like protein
Ykud domain
YodA
YycH protein
YycH protein
alpha/beta hydrolase fold
lactate/malate dehydrogenase, NAD binding domain
mRNA capping enzyme, catalytic domain
mttA/Hcf106 family
rod shape-determining protein MreC
von Willebrand factor type A domain
Keyword search by user-defined domain decription
Copyright © 2010 Miaomiao Zhou
