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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:116617450
NCBI info 116617450 Gene: - Synonym: LEUM_0324
SCL: @N-terminally anchored (No CS) Length 436 COG -
Species: Leuconostoc_mesenteroides_ATCC_8293 Location 278664..279974 Strand: +
Product: Muramidase
Sequence: 
MGKFFKKTLLTTAAGAAAFVGGHAAASADTVEVQSGDTLSKIAAANNTTVDALAKANGISNKDLILAGSSLEINATQEVSGLSEDGTSYTVQSGDTLSKI
AEKTGVDVSVLSSLNSLSNTDLVLTGQELSLKASTTQATSSAATTVTAASAQSSSVDTSNLKYIAAADTDSNNFMTLDEYNTYVANGGSTSSAATESSAS
SASASSATEDITYIAAADSDNDGYMTMAEYNAYKANGGSTSSSAQATTSTASSSASTSSASSSTSDNITYVAAADTNNDGYMTMAEYNAYKANGGSTSSA
SSASSSTQTTTTNTTATATTTNVSTGSTTADATINAWNAKRAELGLSPVTISASLTSQAQSRAQSIGTSSNWFSTHMSSGTAEVVANGFGAGSSVINAWY
YETGMVNGGHTAFIVNPNFTQAGVGYYNGWIVINAQ


This pseudogene can be concatenated as : 116617450_116617451
Concatenated Sequence: 
MGKFFKKTLLTTAAGAAAFVGGHAAASADTVEVQSGDTLSKIAAANNTTVDALAKANGISNKDLILAGSSLEINATQEVSGLSEDGTSYTVQSGDTLSKI
AEKTGVDVSVLSSLNSLSNTDLVLTGQELSLKASTTQATSSAATTVTAASAQSSSVDTSNLKYIAAADTDSNNFMTLDEYNTYVANGGSTSSAATESSAS
SASASSATEDITYIAAADSDNDGYMTMAEYNAYKANGGSTSSSAQATTSTASSSASTSSASSSTSDNITYVAAADTNNDGYMTMAEYNAYKANGGSTSSA
SSASSSTQTTTTNTTATATTTNVSTGSTTADATINAWNAKRAELGLSPVTISASLTSQAQSRAQSIGTSSNWFSTHMSSGTAEVVANGFGAGSSVINAWY
YETGMVNGGHTAFIVNPNFTQAGVGYYNGWIVINAQxMAITTVGLLLTHNNMQNDYLKLALDNLGKTFNDYNSGRFVAQQLMRAQVPLPEGSHWDASPAH
LIKQMHHLLGVLQATPGDLLFWGTQNAPYEVGIYVGGNHFIAVNNGDHVAKIQTLSRNWYPCIAGSIF


Protein clustering result of GI: 116617450
protein GI: 116617450 is in cluster LaCOG00356
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG00356 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG00356
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293MgKffkktlLtTAAGAAAFVgGhAaASADTVeVqSGDTLskIAAANnTTVDALAKANGIs


116617452Leuconostoc_mesenteroides_ATCC_8293MkKstiaKsvvTAAGAfA-VAGaAqvSAnTVSVKaGDTLykIASANGTTVDALvKANnIs


170016589Leuconostoc_citreum_KM20MsnnikktlLATAAGvAAFVgGhAaASADTVSVKSGDTLtgIASeNnTTVDdLAKANnIN


170016591Leuconostoc_citreum_KM20MksstiiKs-AvAAGAfA-aAGvAtASAnsVTVKSGDTLnqIArANGTTVDALvKANGIN


 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293NkdLIlAGssLEi-----------NAtqevsglSeDGtSYTVqsGDTLsKIAektGvDVs


116617452Leuconostoc_mesenteroides_ATCC_8293NaNLIFvGQQLQTasSSStttqSSSsesSttttSSsnGSYTVKsGDTLnKIAAaNGTtVA


170016589Leuconostoc_citreum_KM20dkNLIiAGQQLtv------------AaPAaksvSADGatYTVqAGDsLsKIAeqtGvNiA


170016591Leuconostoc_citreum_KM20NpNLIFvGQQLQTegTAS----AAqAkPAqapatAtnGaYTVKAGDTLyrIAAaNGTsVA


 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293vLsslNslSNtdLvltGQeLSLKASttqatssaatTvTaasaqSssvdtsnLkYIAAADT


116617452Leuconostoc_mesenteroides_ATCC_8293nLvAtNNISNaNLItVGQtLkLsASStsssTttqsStTttQttSnntat-----------


170016589Leuconostoc_citreum_KM20TLaslNNlAsnNVvvVGQqLSLKA--APvATAPtvTaSeqaqqAaPAaP-kLsYIAAADT


170016591Leuconostoc_citreum_KM20TLvAaNNIqNlNfIsVGQvLNLsgnAAPvAaAPaakqvaaQpavtPAqP-----------


 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293DsNnFMTLDEYNTYvANGGStssaATessassAsASsaTEdItyIAAaDSDNDGYMTmAE


116617452Leuconostoc_mesenteroides_ATCC_8293---------------AsnGSyTvkSgdtlnkiAaAN-gTtvanlvAAnNisNanviTvgq


170016589Leuconostoc_citreum_KM20NkDgFMSLEEYNTYkANGGdtTvtAStPaaqpAqAS-vpEnVqyIAAaDTNkDGFMsaAE


170016591Leuconostoc_citreum_KM20-----------------atSaakqvTqPevapAtvA-pTQtVapvqqttT----------


 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293YnAYKANGGSTSsSAqaTTStasssastssassstsdnityvaaadtnndgymtmaeyna


116617452Leuconostoc_mesenteroides_ATCC_8293tlklsAssaSTSsSStaTTS----------------------------------------


170016589Leuconostoc_citreum_KM20YaAYEANGGSaaQqqapaap----------------------------------------


170016591Leuconostoc_citreum_KM20---------vTtQAAetTTA----------------------------------------


 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293ykanggstSSaSsaSssTQtTTTnTtaTAtTtNvsTgSttADAtINAWNAKRAeLGLSPV


116617452Leuconostoc_mesenteroides_ATCC_8293-------qSSSStqSssTsnnTasTsnTsnTsNssstSttADAtINAWNAKRAtLGLSPi


170016589Leuconostoc_citreum_KM20----------StataqvTQvaTTqTvaTtQqAapAa-SSdvEtLVNAmNArRAaLGLAPV


170016591Leuconostoc_citreum_KM20----------ttqvtpvvaqTTTpavqpAQTAtpATpnSaiqtLlttlNAKRskLGLgPV


 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293tIsAsLtsQAQSRAQsigtssnWfstHmSSgTaEVVAnGFGaGSSVINAWYyETGMV--N


116617452Leuconostoc_mesenteroides_ATCC_8293kIsAsLtAQAQSRAQalatssnWfglHeSSsTpEVVAnGFaaGATVINAWYyETGMV--N


170016589Leuconostoc_citreum_KM20rlDAGLSArAQgRAQdAaANGGiptnHfStN-gEVVAdGFstG-SVIdAWYNETnMmTpN


170016591Leuconostoc_citreum_KM20slDAGLSArAaARAanAvANGGlpvnHfrtN-gEVVAiGwGyG-dVvNAWYNETnMVT-N


 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293G--GHtaFIvNPnfTqAGvGyynGwIVinAqxmaittvglllthnnmqndylklaldnlg


116617452Leuconostoc_mesenteroides_ATCC_8293G--GHteFIvNssfTeAGvGyydGwIViDAh-----------------------------


170016589Leuconostoc_citreum_KM20GqPGHRmwvANsRAsavGFGIVGGvIVgEsD-----------------------------


170016591Leuconostoc_citreum_KM20GtPGHRmwvANPRATsvGFGIVGdtIVaEsD-----------------------------


 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293ktfndynsGrFvaqqlmraqvplpegshwdaspahlikqmhhllgvlqatpgdllfwgtq


116617452Leuconostoc_mesenteroides_ATCC_8293------------------------------------------------------------


170016589Leuconostoc_citreum_KM20-------AGQF-------------------------------------------------


170016591Leuconostoc_citreum_KM20-------AGQy-------------------------------------------------


 


116617450_116617451Leuconostoc_mesenteroides_ATCC_8293napyevgiyvggnhfiavnngdhvakiqtlsrnwypciagsif


116617452Leuconostoc_mesenteroides_ATCC_8293-------------------------------------------


170016589Leuconostoc_citreum_KM20-------------------------------------------


170016591Leuconostoc_citreum_KM20-------------------------------------------






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
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