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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:116514860
NCBI info 116514860 Gene: - Synonym: LBUL_1931
SCL: @LPxTG Cell-wall anchored Length 101 COG -
Species: Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365 Location 1755404..1755709 Strand: -
Product: hypothetical protein
Sequence: 
MQSASEETSTAKKANDDAVKAQNGQDYSRSRADQQTAAANDEAKAKLANTAPVAKAPAATAAQLPQTGEKDAKPGILAGILSLLAGVSLFGFSFEKRKQE
K


This pseudogene can be concatenated as : 116514862_116514860
Concatenated Sequence: 
MKARSETRIKQMAAVAAAGIGAVSLGAANLPQPVNAATNDVQASSSQDYLKAAQENVKTAEAENTQAQQAASQAQGAVADQESAVNEAQKANEAAQTDLS
AAQDAQAAAAKNAEANKAAQAADQANLDQAKEAQTKAGQALxMQSASEETSTAKKANDDAVKAQNGQDYSRSRADQQTAAANDEAKAKLANTAPVAKAPA
ATAAQLPQTGEKDAKPGILAGILSLLAGVSLFGFSFEKRKQEK


Protein clustering result of GI: 116514860
protein GI: 116514860 is in cluster LaCOG99191
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG99191 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG99191
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842MKARSETRIKQMAvVAAAGIGAVSqrghxf--------ggkEgSvghcYgKSgRnSaRfe


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365MKARSETRIKQMAaVAAAGIGAVSlgaanlpqpvnaatndvQaSssqdYlKAaQeNvKta


 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842pgKgplgclgSNtAdGp---dpTtptEptQpStepsTDpTtepttEpSkepStEptaeey


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365eaEntqaqqaASqAqGavadqeSavnEaqKaNeaaqTDlSaaqdaQaAaakNaEankaaq


 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842teEpAD----tEedTdgGdvVtVvNtdEEpAT------------------------KSAA


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365aaDqANldqakEaqTkaGqaLxMqSasEEtSTakkanddavkaqngqdysrsradqQTAA


 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842ktptlvtKLANTAPVAKAPAATAAQLPQTGEKDAKPGILAGILSLLAGVSLFGFSFEKRK


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365andeakaKLANTAPVAKAPAATAAQLPQTGEKDAKPGILAGILSLLAGVSLFGFSFEKRK


 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842QEK


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365QEK






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
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