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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:116512354
NCBI info 116512354 Gene: - Synonym: LACR_1651
SCL: @Intracellular Length 136 COG -
Species: Lactococcus_lactis_cremoris_SK11 Location 1560785..1561195 Strand: -
Product: hypothetical protein
Sequence:
MVGRHVISSQTDNIAAKFIPDSQNLTDAADQIGSATPSAIASKLNENSDTIKSQSQGLINSAKATSTDSKLTYTLESSKLNKATVGALLLASGDQVKDVA
DKVLDSMKKAGVAQPKLQIDLTDDKGNIIKTLDYSA


This is a pseudogene


Protein clustering result of GI: 116512354
protein GI: 116512354 is in cluster LaCOG02620
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG02620 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG02620
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes
15673539Lactococcus_lactis_lactis_IL1403MNSRKsKkvRKgRGGKIFAILLSIVIFfALIIFGVVMIGRqVISSQTDNIAAKFlPsSgs
116512354Lactococcus_lactis_cremoris_SK11------------------------------------MvGRHVISSQTDNIAAKFIPDS--
125623785Lactococcus_lactis_cremoris_MG1363MNSRKrKteKKrRGGKVFAILLSLIIFlALIVFGIVMIGRHVISSlTDNIAAKFIPES--
 
15673539Lactococcus_lactis_lactis_IL1403sgssegsasvTDAvsQmGSATPSAIAtKLNENaDvIKSQSQGmIsSAKATSTsSKvTYTL
116512354Lactococcus_lactis_cremoris_SK11-------QNLTDAADQIGSATPSAIASKLNENSDTIKSQSQGLINSAKATSTDSKLTYTL
125623785Lactococcus_lactis_cremoris_MG1363-------QNLTDAADQIGSATPSAIASnLNENSDTIKSQSQGLINSAKATSTDSKLTYTL
 
15673539Lactococcus_lactis_lactis_IL1403ESSKLNKATVGALLLASGDQVeeVADKVLDSMKKAGVAQPKLQvDLTDDKGNvIKTLnYS
116512354Lactococcus_lactis_cremoris_SK11ESSKLNKATVGALLLASGDQVKDVADKVLDSMKKAGVAQPKLQIDLTDDKGNIIKTLDYS
125623785Lactococcus_lactis_cremoris_MG1363ESSKLNKATVGALLLASGDQVKDVADKVLDSMKKAGVAQPKLQIDLTDDKGNIIKTLDYS
 
15673539Lactococcus_lactis_lactis_IL1403A
116512354Lactococcus_lactis_cremoris_SK11A
125623785Lactococcus_lactis_cremoris_MG1363A
 
Copyright © 2010 Miaomiao Zhou
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