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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:104774729
NCBI info 104774729 Gene: - Synonym: Ldb2087
SCL: @LPxTG Cell-wall anchored Length 79 COG -
Species: Lactobacillus_delbrueckii_bulgaricus_ATCC11842 Location 1750406..1750645 Strand: -
Product: hypothetical protein
Sequence: 
FGGKEGSVGHCYGKSGRNSARFEPGKGPLGCLGSNTADGPDPTTPTEPTQPSTEPSTDPTTEPTTEPSKEPSTEPTAEEYTEEPADTEEDTDGGDVVTVV
NTDEEPATKSAAKTPTLVTKLANTAPVAKAPAATAAQLPQTGEKDAKPGILAGILSLLAGVSLFGFSFEKRKQEK


This pseudogene can be concatenated as : 104774731_104774729
Concatenated Sequence: 
MKARSETRIKQMAVVAAAGIGAVSQRGHxFGGKEGSVGHCYGKSGRNSARFEPGKGPLGCLGSNTADGPDPTTPTEPTQPSTEPSTDPTTEPTTEPSKEP
STEPTAEEYTEEPADTEEDTDGGDVVTVVNTDEEPATKSAAKTPTLVTKLANTAPVAKAPAATAAQLPQTGEKDAKPGILAGILSLLAGVSLFGFSFEKR
KQEK


Protein clustering result of GI: 104774729
protein GI: 104774729 is in cluster LaCOG99191
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG99191 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG99191
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842MKARSETRIKQMAvVAAAGIGAVSqrghxf--------ggkEgSvghcYgKSgRnSaRfe


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365MKARSETRIKQMAaVAAAGIGAVSlgaanlpqpvnaatndvQaSssqdYlKAaQeNvKta


 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842pgKgplgclgSNtAdGp---dpTtptEptQpStepsTDpTtepttEpSkepStEptaeey


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365eaEntqaqqaASqAqGavadqeSavnEaqKaNeaaqTDlSaaqdaQaAaakNaEankaaq


 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842teEpAD----tEedTdgGdvVtVvNtdEEpAT------------------------KSAA


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365aaDqANldqakEaqTkaGqaLxMqSasEEtSTakkanddavkaqngqdysrsradqQTAA


 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842ktptlvtKLANTAPVAKAPAATAAQLPQTGEKDAKPGILAGILSLLAGVSLFGFSFEKRK


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365andeakaKLANTAPVAKAPAATAAQLPQTGEKDAKPGILAGILSLLAGVSLFGFSFEKRK


 


104774731_104774729Lactobacillus_delbrueckii_bulgaricus_ATCC11842QEK


116514862_116514860Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365QEK






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
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