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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:999990032
NCBI info 999990032 Gene: Synonym: llmg_0923b
SCL: @N-terminally anchored (No CS) Length COG
Species: Lactococcus_lactis_cremoris_MG1363 Location Strand:
Product: pseudogene cscC, C-terminal fragment
Sequence: 
VNYNGNNTNIANSYYLNDIVGGGGNDAGNGSNYWQVGDSYLIQNNSAARWTYGAGWSGNQIGNSYNFNNGAVTDTLEGGMYGSGGTVYGNTSAQFNNGQT
DWFLSGGAWNGRYISGNMTTIVNNGVIPANTGGNYALAGNNVTGGDSSVYIYGGDFSNAPRQDGPKTVCGGNFNSGNSVVYGNSSLTLDLTGPKGNTFQF
PSQNTYLSAGPGYNKTGIQSGTDAKNTINLTIKANANTATKLSSATIYGDGSNSTNIKAGTINMLIDADGATVGNVYASNRSIISSSGLARNVTTKIGEG
TTIAGNIYNSASSDNLTSVYANTGSNVSMIQFGDGSGGLLNGTNATATNHAATYCKHGTIEMDEDSILAVSSSTSVISGSKLIAYPNATLSTPYVQTSGL
INLSDLDLSTNKGNLFWKPIGNPPASISNTYNGAYWGTQSAFPILTFNGGDTSTKSGAANITPNNFSGVDSAKNYAFLGDYTMSSLATPSNPTWIGYVVP
GQVRVYNTTGDADSGNWQHHLKSNITTGNPVAGQTMQAWASVASDTDASSVKVMYVMGYSDSTTAPFSFTAKAPYYIKSRTATAFDGKVLNDYPSTNPNF
DVNAGTTGATSNFGTRDYFVGNQQDGTNDQATYGSYIVQNVTTDNTTSLSAGNYILPNKGSAVNASSLTQAQLQKIVGLKGVGVITDITTSGNPLTSINN
AGNTIQDPTTSDTNVKDKSYAEIPVSWTLGKNSTNSNIVVLPQAAVISSDSQTALNVYDASMTSDDAHNLKDQKDLDGNWTYALAFKVDGTIEEPVISSP
SDLVTTLQTIQANNPIIDGDGNIRPVTYTYNGLSKDITLNLTFGAISLSTPNSYDFGTLDVSPKPLISWATSPASDVVVTDTRTGSALKPWYVSVAQTQD
LKGLTNDNNLASYLFFKDSTESKVITSDALQIYANTSPTTGTFKLNQNWNSSSDEGIQLNIPVDHQEKGTYEGQLTWSLNNVPSN


This is a pseudogene


Protein clustering result of GI: 999990032
protein GI: 999990032 is in cluster LaCOG01033
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG01033 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG01033
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


29377638Enterococcus_faecalis_V583mklMkkKiavlLaTcllvqpfLsvsawaiegeqqtertqtqPktaetStsEatKessahS


15673561Lactococcus_lactis_lactis_IL1403---MQRKYKFKLVTFIMLLSLL-------------------PTINfngfssEsKkenVki


116512388_116512385Lactococcus_lactis_cremoris_SK11---MQRKYKFKLVTFIMLLALv-------------------PSMNlGTiPQDfnSGRVtS


999990031_999990032Lactococcus_lactis_cremoris_MG1363---MQRKYKFKLVTFIMLLALv-------------------PSMNlGTiPQDfnSGRVtS


 


29377638Enterococcus_faecalis_V583TeqssMtessaitekvTtSstetkpseeqkqitltFEtTdqalflndaksyqvvkekNqP


15673561Lactococcus_lactis_lactis_IL1403nyLeKMLSsQgVsAaTqtlinS---qSVsPSGt-tFnGnS-------------vsQPNRt


116512388_116512385Lactococcus_lactis_cremoris_SK11TsLGKMLSPQeVGATTSNThmSSMlKSVvPTGSVDFEGTT-------------IPQPsRP


999990031_999990032Lactococcus_lactis_cremoris_MG1363TsLGKMLSPQeVGATTSNThmSSMlKSVvPTGSVDFEGTT-------------IPQPsRP


 


29377638Enterococcus_faecalis_V583lrteeLPkwanseenatFvGWsyqgktytneellqlefsedtqltavfkqkltrmaravs


15673561Lactococcus_lactis_lactis_IL1403pLpqnsve--DAimpnSF-GW---------------------------------------


116512388_116512385Lactococcus_lactis_cremoris_SK11aLnMKLPT--EAtngTSF-Gy---------------------------------------


999990031_999990032Lactococcus_lactis_cremoris_MG1363aLnMKLPT--EAtngTSF-Gy---------------------------------------


 


29377638Enterococcus_faecalis_V583idQSIAdti-aPAdktKVIvvpspagdGaaykeYaS-TeAGlkeALfdLYqqgn--ngDF


15673561Lactococcus_lactis_lactis_IL1403-QQtIAnLT-LPtnQVtav------qNGtiIgsYpt-TDAGVQqALyamYSatnaStSDF


116512388_116512385Lactococcus_lactis_cremoris_SK11-QsSIAGLTGItAGQIEVI------kNGVpVqNYTSVTDsnVQTALqyIYSnAD-SSSDF


999990031_999990032Lactococcus_lactis_cremoris_MG1363-QsSIAGLTGItAGQIEVI------kNGVpVqNYTSVTDsnVQTALqyIYSnAD-SSSDF


 


29377638Enterococcus_faecalis_V583tLyIGnNITtSAaTtAkVIpDtvTAsnmTFyaLqGKVnhlvItgNSADpi-SmdqtAptG


15673561Lactococcus_lactis_lactis_IL1403gLyyGaNtTLSNslLkaVVsNp-sATnmTFstLkGhaKSlTwISNpADlLtSSnssqpSG


116512388_116512385Lactococcus_lactis_cremoris_SK11vLFIeGNVTLSSTTMSn------TtTGgTFaSLNGKVKSITIIANTtDsLVSSPnvAASG


999990031_999990032Lactococcus_lactis_cremoris_MG1363vLFIGGNVTLSSTTMSn------TtTGgTFaSLNGKVKSITIIANTtDsLVSSPyvAASG


 


29377638Enterococcus_faecalis_V583-skTlgfnqNiYFGSNitlRNlNy--tGtNmYlnGysLnlngGS--sGnGltVYGGtD-T


15673561Lactococcus_lactis_lactis_IL1403tNYTgTlPSNvYFGvpTiFRNVtVAAsGDNiYAQGNafAttnGSwiTGap-niYGGtD-n


116512388_116512385Lactococcus_lactis_cremoris_SK11-NYTiTtPTNnYFGASTaFRNVNVAAvnDNFYAQGNPIAfmpGSnFTGTGISVYGGSDGT


999990031_999990032Lactococcus_lactis_cremoris_MG1363-NYTiTtPTNnYFGASTaFRNVNVAAvnDNFYAQGNPIAfmpGSnFTGTGISVYGGSDGT


 


29377638Enterococcus_faecalis_V583gDVsGnptltVnSTGT-GTwNFYGGNqnGGNlaGNptivInNTrSGLnTlsGG-AniGtv


15673561Lactococcus_lactis_lactis_IL1403SDisGnTNlYiGaTGsiagwNiYGGNASaatISGNTHVTIaqssStinsVTGGsASGttI


116512388_116512385Lactococcus_lactis_cremoris_SK11SsVMGDTNIYVGSTGT-GTMsFYGGNSAGGNISGNTHVSIiNa-SGLGTVTGGNASGGII


999990031_999990032Lactococcus_lactis_cremoris_MG1363SsVMGDTNIYVGSTGT-GTMsFYGGNSAGGNISGNTHVSIiNT-SGLGTVTGGNASGGII


 


29377638Enterococcus_faecalis_V583tGnTsLvVnds-gGrIASIYGgGyGTnAtNtaNVtGNVstkVaiTnAatgfqlsTYYGGv


15673561Lactococcus_lactis_lactis_IL1403SGnTNLdisGaiasqItnIYGAGIGTSn-sPVNVNGNVttyVNsTngGArYq--lYqGGt


116512388_116512385Lactococcus_lactis_cremoris_SK11SGDTNvsVTGf-tGNIASmYGAGVGTSA-NPVtVNGNVyNnwDyTiSGAsYN-GTYYGGA


999990031_999990032Lactococcus_lactis_cremoris_MG1363SGDTNvsVTGf-tGNIASmYGAGVGTSA-NPVtVNGNVyNnwNsTiSGAsYN-GTYYGGA


 


29377638Enterococcus_faecalis_V583qYGNIgGkvtNdisGyGrWytA----------gQrFiGGssrGdIGTnrATd-gIttnln


15673561Lactococcus_lactis_lactis_IL1403vYGNIsGSIYNTlsGaGgWtGAtsningaggpastFNGGsfqGnIGTSGAgN-vIsNsYn


116512388_116512385Lactococcus_lactis_cremoris_SK11gYGtIkGTIYNTFKGlGsynGe-----------EmyNGGvqNGTvGvSGvTNSaIvNDYD


999990031_999990032Lactococcus_lactis_cremoris_MG1363gYGtIkGTIYNTFKGlGsynGe-----------EmyNGGvqNGTvGvSGvTNSaIvNDYD


 


29377638Enterococcus_faecalis_V583TqlysaGrAdFeG--GnqysGt---------------IiGdItNvvtaG--TNsAGgind


15673561Lactococcus_lactis_lactis_IL1403TSsFTtGqAlFtG--GnagtGaSyaqatnsttaaqgilYaNItNYiKsaftTgtAGavyG


116512388_116512385Lactococcus_lactis_cremoris_SK11TSkFTGGYAnFaGIAGAnnAGGSNSNSVT--------VYGNvINYTKTGYGTSGtsfMgG


999990031_999990032Lactococcus_lactis_cremoris_MG1363TSkFTGGYAnFaGIAGAnnAGGSNSNSVT--------VYGNvINYTKTGYGTSGtsfMgG


 


29377638Enterococcus_faecalis_V583fnGgaGnnvsKfnKsq------------IGaSneaTydaytPqqrAelAkSaAafKvfGN


15673561Lactococcus_lactis_lactis_IL1403ivGgnGhDsLKispsqwglgsqtgldsaVGvTdAkaygqIpsTtvvSnAQkitSnaiYGd


116512388_116512385Lactococcus_lactis_cremoris_SK11aaGAyGaDyLynTKMP----------------aSgTANdVnPTaaAStAESsASeKLYGN


999990031_999990032Lactococcus_lactis_cremoris_MG1363aaGAyGaDyLynTKMP----------------aSgTANdVnPTaaAStAESsASeKLYGN


 


29377638Enterococcus_faecalis_V583isskLvSGsfn----------nGaiYstaaGrG-GyIeGNTtiEVG---TANGDgSlGgD


15673561Lactococcus_lactis_lactis_IL1403vYTWLqSGvMsttsgggandwtGYsYgassn---GylqGqsVlEaG---TANaDNSvGga


116512388_116512385Lactococcus_lactis_cremoris_SK11AYTWLrSGlVG----------aGYdYNivlGGGYGFIKGNTIMEVGDASTApGgNtsGEN


999990031_999990032Lactococcus_lactis_cremoris_MG1363AYTWLrSGlVG----------aGYdYNivlGGGYGFIKGNTIMkVGDASTApGgNtsGEN


 


29377638Enterococcus_faecalis_V583Gma------------------Ysgak----------ptslDYsttDksrgySSgw-DIVG


15673561Lactococcus_lactis_lactis_IL1403GVv------------------YcsamggtaettlaAqgtVaYgktDTssAinSgw-DlwG


116512388_116512385Lactococcus_lactis_cremoris_SK11GVTDGSrssstrtgiggsgfvvigdqgdgslasteAangVNYNgNnTNiAnSyyLNDIVG