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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:999990024 is not in any secretome LaCOG
NCBI info 999990024 Gene: Synonym: Lreu_1347
SCL: @N-terminally anchored (with CS) Length COG
Species: Lactobacillus_reuteri_F275_JGI Location Strand:
Product:
Sequence:
MDIKKHFKLYKSGKQWFTAAIITAVSAGLILNLGGGSKC


This pseudogene can be concatenated as : 999990024_148544564
Concatenated Sequence:
MDIKKHFKLYKSGKQWFTAAIITAVSAGLILNLGGGSKCxGGVASADSATNANDNVAVNQPAAQTSENIKSVSSNASTNDVTNNQKAQKVQSPKSINPKA
DNSNQQQNRWVKNAQGQMEYYQNNQLLKGRQYVNLPTIPNTNVQTDNNWYLVDNGIAQSGVQQWAGSYYYFNPSTYLRVDNEYRQSQWGDWYMFGKDGRA
VTGLYDYNGNTYYANPTTYLRETNKYISTSKGNMLLGNDGAALSGIQSVNGKYYYFDPVTHLQANKENYVQSQWGDWYLIGNDGQVLSGVQQWAGTYYYF
DPTTYLRVDNDYRQSQWGLWYMFGHDGRIVTKVYPWAGTYYYFDPTTYLRVDNAYLQSQWGDWYLFGNDGRIQSGVQRWAGTYYYFDPTTYLRVDNDYVT
SQWGSKYMFGPDGRIVTGLYKWSKNNQLYYFDPVTYLAVTNNYIKANNGNWYLFTADGTAASKVAPWAGSYYYFDPVTHLRVDNAYVQSQWGDWYMFGPD
GRIVTGLKEWYGSYYYFDPTTYLKVTNKWIDNKYFGPDGRQAISSLENINNKFYCFDGNGQIIRNQFKKIDTHTYYFGSDGAALVGKQTIDGKNYHFASN
GQLLGNLYGKIVDGKFNIYDSLSNKLIKTLDSGDWENMAYSQDSSSINNTDGYLSYSGWYRPYGTSQDGKTWYKTTASDWRPLLMYTWPSKDVEAKFIKY
FVDNGYTNTDYGLTKDNVTNLSQDTDTQTLNKYARNLRFVIEKSIAANKSTGPLANDINKFMLTIPELSAKSELPVEYSNGYVPDVSGSIDNNQLIFINN
NSDNQAKGNTSYADSNYRLMNRTINNQTNNDNSDQSPELLVGNDIDNSNPAVQAENFNWEYFLLNYGKLMKYNADGNFDGFRVDAADNIDADVLDQLGQL
VNDMYHTKGNQENANNHLVYNEGYHSGAARMLNDKGNPELFMDAGYFYTLENVLGQAENKRDNVNNLITNSVVNRANDITENTATPNWSFVTNHDQRKNV
INQIIIDNHPNIPDIMANSYKSTYAQKAWDEFYADQAKADKKYAQYNLPAQYALLLSNKDTVPQVYYGDLYKETDQYMKTKSMYYDAITTLMKARGEFVN
GGQTMTKVNDNLITSVRYGKGVVDVSSNGTDPLSRTTGMAVIVGNNPSMSEQVVAINMGLAHANEQYRNLIDSTADGLTYNSNGSVNPSVLTTDSKGILR
VTVKGYSNPYVSGYLSVWVPLINGTQNARTSAQEVRNVPGKVFTSNAALDSHMIYEDFSLFQPEPTTVNEHAYNVIKDNVALFNQLGITDFWMAPSYTPF
NTSRYNEGYAMTDRYNLGTADNPTKYGNGEELSNAIAALHQAGLKVQEDLVMNQMIGFSTQEAVTVTRVDRDAKQLSVDGQTFADQIYFGYTRGGGQGQQ
DYGGKYLAELKQKYPDLFTTKAASTGVAPDPNTRITEWSAKYENGTSLQNVGIGLAVKMPNGYYAYLNDGNNKAFATTLPDAISSADYYANQENI


Copyright © 2010 Miaomiao Zhou
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