LAB-Secretome DB


LAB-Secretome DB A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Protein

GI:999990011
NCBI info	999990011	Gene:		Synonym:	LACR_0810
SCL:		Length	91	COG
Species:	Lactococcus_lactis_cremoris_SK11	Location		Strand:
Product:
Sequence:	VTGLNNVYIYPKSSVDKEETISPPQAKPQPKPKPIEVPNAPKKVDDSSKKVFGLLPKTGVVSSLLLTSYGFALFLIIILLKKHIKNEEEVK

This pseudogene can be concatenated as : 116511569_999990011

Concatenated Sequence:

LTKRIKLMSILAFALVLIFGFVSQNAFADSRLTIVKYGLIPGASGFSENQTTNDGLKINNLPLDNLGNELSVVSGIHYLVYEISPIGNGSELTATNPPQS
SYRISKEIADLVTDSNGVTSLSVSDGYYLIEK+SNPQKGLLKPALPLVVKLPVTGLNNVYIYPKSSVDKEETISPPQAKPQPKPKPIEVPNAPKKVDDSS
KKVFGLLPKTGVVSSLLLTSYGFALFLIIILLKKHIKNEEEVKxVTGLNNVYIYPKSSVDKEETISPPQAKPQPKPKPIEVPNAPKKVDDSSKKVFGLLP
KTGVVSSLLLTSYGFALFLIIILLKKHIKNEEEVK

This is a corrected sequence

Protein clustering result of GI: 999990011

protein GI: 999990011 is in cluster LaCOG02496
Species	GI	Gene	Synonym	NC	Product	Sub cellular Location	Length	In original LaCOG

Color Legend:

Corrected sequence

Pseudo gene

Protein Domain structure of LaCOG02496 (Scale up the web page to see more details)

View this figure in PNG format

Multiple Sequence alignment of LaCOG02496

Color Legend:

Corrected sequence

Pseudo gene

Gene made from mutiple pseudogenes


15672742	Lactococcus_lactis_lactis_IL1403	MTKssKLMgvLivtLlLflGFVSQkAFADSRLiIVKYGLsPGAtGFSENQTTNDGLqINN
116511569	Lactococcus_lactis_cremoris_SK11	LTKriKLMSILAFALVLIFGFVSQNAFADSRLTIVKYGLiPGASGFSENQTTNDGLKINN
125624589	Lactococcus_lactis_cremoris_MG1363	-------MSILAFALVLIFGFVSQNAFADSRLTIVKYGLsPGASGFSENQTTNDGLKINN

15672742	Lactococcus_lactis_lactis_IL1403	LPLDNLGNELSVlSGIHYLVYEISPTGdGSELkATNPPpSSYTvlKEvADLaTDSNGVAS
116511569	Lactococcus_lactis_cremoris_SK11	LPLDNLGNELSVVSGIHYLVYEISPiGnGSELTATNPPQSSYrIsKEIADLVTDSNGVtS
125624589	Lactococcus_lactis_cremoris_MG1363	LPLDNLGNELSVVSGIHYLVYEISPTGvGSgLTATNPsQtSYTIsKEIADLVTDSNGVAS

15672742	Lactococcus_lactis_lactis_IL1403	LSVSDGYYLIEEQtNPQKGLLKtALPLViKaPVSGLNeVYIYPKSSVDKEkT--gPpnKP
116511569	Lactococcus_lactis_cremoris_SK11	LSVSDGYYLI-EkSNPQKGLLKPALPLVVKLPVtGLNNVYIYPKSSVDKEETISPPQaKP
125624589	Lactococcus_lactis_cremoris_MG1363	LSVSeGYYLIEEQSNPQKGLLKPALPLVVKLPVSGLNNVYIYPKSSVDeEETISPPQanP

15672742	Lactococcus_lactis_lactis_IL1403	nPaPKPIEVPkAPKskDDSSKKVFGLLlKTGVaSSLLLTSYGFvLFLIIIcLKKrrKkEE
116511569	Lactococcus_lactis_cremoris_SK11	QPKPKPIEVPNAPKkvDDSSKKVFGLLPKTGVVSSLLLTSYGFALFLIIIlLKKHiKNEE
125624589	Lactococcus_lactis_cremoris_MG1363	QPKPKPIEVPNAPKtvDDSSKKVFGLLPKTGVVSSLLLTSYGFALFLIIIfLKKHsKNEE

15672742	Lactococcus_lactis_lactis_IL1403	EVK
116511569	Lactococcus_lactis_cremoris_SK11	EVK
125624589	Lactococcus_lactis_cremoris_MG1363	EVK