LAB-Secretome DB


LAB-Secretome DB A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Protein

GI:999990008
NCBI info	999990008	Gene:		Synonym:	LVIS_0341-N
SCL:	@N-terminally anchored (with CS)	Length	84	COG
Species:	Lactobacillus_brevis_ATCC_367	Location		Strand:
Product:
Sequence:	MFRLQRWLIVLATVCLTVSPLSVATAKTYHQKSSALSVGRKRTLNDRQVHYVTAPKKYAHAAHPHGRNIMKSSRGAAVTFKT

This pseudogene can be concatenated as : 999990008_116333011

Concatenated Sequence:

MFRLQRWLIVLATVCLTVSPLSVATAKTYHQKSSALSVGRKRTLNDRQVHYVTAPKKYAHAAHPHGRNIMKSSRGAAVTFKTxMGYQLPLPGYHGQAWGN
PQSVTTSGRYLYVLYCPTAWHNRGRIVRYDLQKLKQTGLSATQLQTIYLAHVGAKLAAQAAVKVGPAFVTGHGQSLAYNGHNHQLYLWCDREKKAATPIN
QYGYINQINPKTLKTRYQIRFRLKTWHFAVPGGHVLAFDRRGRAYFWSRPTSQTVYIYQGSVSRHHVHFRLTHQVLKHGPGSHVQSMGYNPHTNRLYLVA
DGSIASLPISKLAGKGHLTSRQVRWTRLASKREFEGLTFTKQGRAIVLSNHNPEVLMGNRTAW

This is a corrected sequence

Protein clustering result of GI: 999990008

protein GI: 999990008 is in cluster LaCOG02819
Species	GI	Gene	Synonym	NC	Product	Sub cellular Location	Length	In original LaCOG

Color Legend:

Corrected sequence

Pseudo gene

Protein Domain structure of LaCOG02819 (Scale up the web page to see more details)

View this figure in PNG format

Multiple Sequence alignment of LaCOG02819

Color Legend:

Corrected sequence

Pseudo gene

Gene made from mutiple pseudogenes


28378022	Lactobacillus_plantarum_WCFS1	mrlKiRgRWLLgLmlgmgLwG-PvtvhaAtnlvrwpavqslaprnceleskqtrlyqlnr
999990008_116333011	Lactobacillus_brevis_ATCC_367	-MFRlq-RWLivLatvcltvs-PlsvatAKT-----------------------------
116334652	Lactobacillus_brevis_ATCC_367	-MiqtR-hWLLaatiaalLvGgPalsahAKT-----------------------------

28378022	Lactobacillus_plantarum_WCFS1	atmqlTprGtArttsHwqrVGqvmvtQNkrL-VtYwqvrhgtagrlswaladtvrvvgtR
999990008_116333011	Lactobacillus_brevis_ATCC_367	----yhQksSAlS------VGRkrTlndRq--VhYvtapk-------------------K
116334652	Lactobacillus_brevis_ATCC_367	----tTQHGNAlAayN---VkRykTvKNRNLfVkryafqq-------------------s

28378022	Lactobacillus_plantarum_WCFS1	vTDvktPtrqpmRvvttdqqehgVTraANklsyLPLkgaeryttehilfrptaaylatqg
999990008_116333011	Lactobacillus_brevis_ATCC_367	YahAahPhg---RnImkSsRGaAVTfKtxmgyqLPLpg----------------------
116334652	Lactobacillus_brevis_ATCC_367	YTNifqtsp---tqI-sStKGkAVTfKSNv--fLPvty----------------------

28378022	Lactobacillus_plantarum_WCFS1	lqnqpdtlrqssgyrdhyhfktalYlpQqlGsrllndPQSatfsaDnRYLYvmYvndqQl
999990008_116333011	Lactobacillus_brevis_ATCC_367	------------------------YhgQaWG-----NPQS--vTtsGRYLYvLYcptaw-
116334652	Lactobacillus_brevis_ATCC_367	------------------------qrsadWG-----NPQSevlTpNGntLYeLittssQ-

28378022	Lactobacillus_plantarum_WCFS1	ggadqTGwvVRYDwQrLmalGagqsgkMamVRvAaahqfdGKmTAfDRrVLAaieVGPeF
999990008_116333011	Lactobacillus_brevis_ATCC_367	---hnrGrIVRYDlQkLkqtGlsaT-qlqtIylA---HvgaKLaAq-----AaVkVGPaF
116334652	Lactobacillus_brevis_ATCC_367	---stTGrIVRYnlgaLrhfGitsT-hMdaLRrAtydHsvGKLTAtDKaILknVtVGPlF

28378022	Lactobacillus_plantarum_WCFS1	taGHvQSLAlNPKtneLWFi------SSTardQlAsVarLNPqsLtPdlKIaFTtg----
999990008_116333011	Lactobacillus_brevis_ATCC_367	vTGHgQSLAyNghNhQLylwcdrekkAATPinQygyinQINPKTLKtryqIrFrLKtwhf
116334652	Lactobacillus_brevis_ATCC_367	nTGHgQSLArNPKNgQLWFi-------gkPgavkSnVqQVstKTLKPstKvnFTLKn---

28378022	Lactobacillus_plantarum_WCFS1	SgrlGdeLTFDRaGqAYyWThaSql--rnGnVtlYrGTISsTtgVHFeqlaQgLaNnPGf
999990008_116333011	Lactobacillus_brevis_ATCC_367	AvPgGhvLaFDRrGRAYFWsrptsq-----tVyIYQGsvS-rhhVHFrlthQvLkHgPGs
116334652	Lactobacillus_brevis_ATCC_367	tvPmGsnLTFDkhGKAYFfTysNggwapkGaVkIYQGTIS-TksVHFhlvmQgLrYaPGt

28378022	Lactobacillus_plantarum_WCFS1	faQSiGYNevTgRLYLVSDeSItSLPAaKL---GHLTtSQVgeaNfaGdREFEGLvFmhH
999990008_116333011	Lactobacillus_brevis_ATCC_367	hvQSMGYNphTNRLYLVaDgSIASLPiSKLagkGHLTSrQVrwTrLaskREFEGLtFTkq
116334652	Lactobacillus_brevis_ATCC_367	kpQSMaYNakrNRLYfVSDsSlASiPvSKL---GkLkASQVegTNLnGhREFEGLqFTsN

28378022	Lactobacillus_plantarum_WCFS1	sqeGFLLtNrGiELMriivdk-
999990008_116333011	Lactobacillus_brevis_ATCC_367	Gr-aivLsNHnpEvlmgnrtaW
116334652	Lactobacillus_brevis_ATCC_367	Gs-GYLLvNkGaELMqtthatF