LAB-Secretome DB


LAB-Secretome DB A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Protein

GI:99990018
NCBI info	99990018	Gene:	Synonym:	str1720A
SCL:		Length	COG
Species:	Streptococcus_thermophilus_CNRZ1066	Location	Strand:
Product:
Sequence:	VSIIYQFISYGKAAKLANPAMAKGKRILIIAGML

This pseudogene can be concatenated as : 99990018_55823614

Concatenated Sequence:

VSIIYQFISYGKAAKLANPAMAKGKRILIIAGMLxMVVLALAGYGFGFYYYSRGQVADRYESATYGKFDSYASNHNTTPDGVSDIFLNGTDDTMYKDVTA
DIDKNTTGAKNRSADSITFSDVDVTKVVQTGEKNFKVTFTAVYDFFYGYDSKLKSSGDIKDKISWSCNVEYVGDDSDSSGSSSNYSDYHINGKAIESQKV
SREDTVK

Protein clustering result of GI: 99990018

protein GI: 99990018 is in cluster LaCOG99032
Species	GI	Gene	Synonym	NC	Product	Sub cellular Location	Length	In original LaCOG

Color Legend:

Corrected sequence

Pseudo gene

Protein Domain structure of LaCOG99032 (Scale up the web page to see more details)

View this figure in PNG format

Multiple Sequence alignment of LaCOG99032

Color Legend:

Corrected sequence

Pseudo gene

Gene made from mutiple pseudogenes


55821692	Streptococcus_thermophilus_LMG_18311	MSIIYQFISYGKAAKLANPAMAKGKRILIIAG-IVVVVLALAGYGFGFYYYSRGQVADRY
116628405	Streptococcus_thermophilus_LMD-9	MSIIYQFISYGKAAKLANPAMAKGKRILIIAG-IVVVVLALAGYGFGFYYYSRGQVADRY
99990018_55823614	Streptococcus_thermophilus_CNRZ1066	vSIIYQFISYGKAAKLANPAMAKGKRILIIAGmlxmVVLALAGYGFGFYYYSRGQVADRY

55821692	Streptococcus_thermophilus_LMG_18311	ESATYGKFDSYASNHNTTPDGVSDIFLNDTDDTMYKDVTADIDKNTTGAKNRSADSITFS
116628405	Streptococcus_thermophilus_LMD-9	ESATYGKFDSYASNHNTTPDGVSDIFLNDTDDTMYKDVTADIDKNTTGAKNRSADSITFS
99990018_55823614	Streptococcus_thermophilus_CNRZ1066	ESATYGKFDSYASNHNTTPDGVSDIFLNgTDDTMYKDVTADIDKNTTGAKNRSADSITFS

55821692	Streptococcus_thermophilus_LMG_18311	DVDVTKVVQTGEKNFKVTFTAVYNFFYGYDSKLKSSGDIKDKISWSCNVEYVGDDSDSSG
116628405	Streptococcus_thermophilus_LMD-9	DVDVTKVVQTGEKNFKVTFTAVYNFFYGYDSKLKSSGDIKDKISWSCNVEYVGDDSDSSG
99990018_55823614	Streptococcus_thermophilus_CNRZ1066	DVDVTKVVQTGEKNFKVTFTAVYdFFYGYDSKLKSSGDIKDKISWSCNVEYVGDDSDSSG

55821692	Streptococcus_thermophilus_LMG_18311	SSSNYSDYHINGKAIESQKVSREDTVK
116628405	Streptococcus_thermophilus_LMD-9	SSSNYSDYHINGKAIESQKVSREDTVK
99990018_55823614	Streptococcus_thermophilus_CNRZ1066	SSSNYSDYHINGKAIESQKVSREDTVK