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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:42518833
NCBI info 42518833 Gene: - Synonym: LJ0908
SCL: @Intracellular Length 100 COG -
Species: Lactobacillus_johnsonii_NCC_533 Location 809354..809656 Strand: +
Product: hypothetical protein
Sequence: 
MVLDNSTRQVKSTINKYLHLATVKKKPYFLSYFDNNSSIQIKEPHKVSQVYLDKHIRVYNFDNLYISNRGTISPRTITIKNGNKEKKIKIQMTWGRMVEE


This is a pseudogene


Protein clustering result of GI: 42518833
protein GI: 42518833 is in cluster LaCOG03110
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG03110 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG03110
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


104773770Lactobacillus_delbrueckii_bulgaricus_ATCC11842---------mRqKAFsLlETVIaLAIAgmLLgIGEmsFqGFEDKInFDrfcRQavglFqE


116513775Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365---------mRqKAFsLlETVIaLAIAgmLLgIGEmsFqGFEDKInFDsfcRQVaglFqE


42518833Lactobacillus_johnsonii_NCC_533--------------------------------------------mvlDNSTRQVkstink


116629901Lactobacillus_gasseri_ATCC_33323------mifkRiKAFTLVETIvTLAIvClLvlmptLyvKnikEqIilDsTTRQIrstink


58337052Lactobacillus_acidophilus_NCFMMvK-LKFprikasAFTLIETlITLtIcCgiLlIGsLQlRksqnrliFDNTTkeVmAAlDq


161507249Lactobacillus_helveticus_DPC_4571MeKlLKlirnkyRAFTLIETmITLAIcCgmmlIGsLQlKkYqnrlvFDNTvkeVtAAlDq


 


104773770Lactobacillus_delbrueckii_bulgaricus_ATCC11842kIRsAaITGKrVvIynqssQGklEViQdGQhEslkIpDGvtVYTNFNNtSgwtISSdGTt


116513775Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365kIRsAaITGKrVvIynqssQGklEViQdGQhEslkIpDGvtVYTNFNNtSgwtISSdGTt


42518833Lactobacillus_johnsonii_NCC_533yLhlATvkkKpyflsYfDNnssIQIkEPhKvsQVylDkhIrVY----NfdNlyISnrGTI


116629901Lactobacillus_gasseri_ATCC_33323yLhrsTvekKsyflsYfDNnssIQImEPhQvsKVylNrhvrVY----NfnNlyISnrGTI


58337052Lactobacillus_acidophilus_NCFMasRisTITddtVtViFskekhyInlsgPnynkQIeINknIdie----glSkFrfSSsGss


161507249Lactobacillus_helveticus_DPC_4571asRisTIeGhaVtViFsENQhyIklvggGhekhVnINEnIdik----gltNFvfSktGrs


 


104773770Lactobacillus_delbrueckii_bulgaricus_ATCC11842SqAFTLRiIknDqGkKEyEkaYtfLLSWGkinEk


116513775Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365SqAFTLRiIknDqGkKEyEkaYtfLLSWGkinEk


42518833Lactobacillus_johnsonii_NCC_533SP----RTITiknGnKEKkiKiQMt--WGRMvEE


116629901Lactobacillus_gasseri_ATCC_33323SP----RTITvksGsKEKkiKiQMt--WGRMvEE


58337052Lactobacillus_acidophilus_NCFMkP----iTvTfsGyGlrREkKYQML--WGRatE-


161507249Lactobacillus_helveticus_DPC_4571aP----RTvTisGyGmkKaiKYQML--WGRMak-






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
		Copyright © 2010 Miaomiao Zhou
		 
		 
	
 
	
 
			 
	 
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