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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:191637185
NCBI info 191637185 Gene: - Synonym: LCABL_03670
SCL: @Intracellular Length 156 COG -
Species: Lactobacillus_casei_BL23 Location 369390..369860 Strand: -
Product: Lipoprotein, putative
Sequence: 
MESESQANNENTQKTTQGIDLHAIGTPPNFHFNGVNVPSHIALDANLSRFSVYSWNESHNGVIRTATGSFTKKVIPMKTVRIFSAPDVHFKNDPPIRSVQ
VNTELDFASNDARFSGGYYIFKNRIGSYSLVTPNFAGNVDVNDQDIMIEARQGQYQ


This pseudogene can be concatenated as : 191637186_191637185
Concatenated Sequence: 
MKRTLGICSAMLVVLGLVGCQSNSADNSPKQETSSKHQTKTESEHSSKAKLAAASKKKPKMHLKHEQILFQNRKLRxMESESQANNENTQKTTQGIDLHA
IGTPPNFHFNGVNVPSHIALDANLSRFSVYSWNESHNGVIRTATGSFTKKVIPMKTVRIFSAPDVHFKNDPPIRSVQVNTELDFASNDARFSGGYYIFKN
RIGSYSLVTPNFAGNVDVNDQDIMIEARQGQYQ


Protein clustering result of GI: 191637185
protein GI: 191637185 is in cluster LaCOG99193
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG99193 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG99193
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


29377464Enterococcus_faecalis_V583MKK---LvcvILVIf-LtGCsSqkANepkKQEnSTnHtTsiKSstNhysSsIetSSnnKl


191637186_191637185Lactobacillus_casei_BL23MKRtlgIcsaMLVVlgLvGCqSnsADnspKQEtSSkHqTktESehSs-kAkLaaASkkKp


 


29377464Enterococcus_faecalis_V583KetsEsasttqtSsKsKnevStNveeanSlEaTpyaVDLsSLnnPlvFNFkGMNVPTsIt


191637186_191637185Lactobacillus_casei_BL23KmhlKheqilfqNrKlRxmeSeSqanneNtQkTtqgIDLhAIgtPpnFHFnGVNVPShIa


 


29377464Enterococcus_faecalis_V583LE-NLNstptaTFrtklfgAeNGqVKeAinkYelsIntIPtKeIRIFSAaD------nsI


191637186_191637185Lactobacillus_casei_BL23LDaNLSrfsvySWne----ShNGvIRtAtgsFtkkV--IPmKtVRIFSApDvhfkndppI


 


29377464Enterococcus_faecalis_V583RTVKVNTELilgtNiSSNDeQnrSGtlYLFnNKnGSiSLITPNYAGNVtdDqKDVMLEvi


191637186_191637185Lactobacillus_casei_BL23RSVQVNTEL----DfASNDaRf-SGgyYIFkNRiGSySLVTPNFAGNVdvNdQDIMIEar


 


29377464Enterococcus_faecalis_V583Q----


191637186_191637185Lactobacillus_casei_BL23Qgqyq






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
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