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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:161506782
NCBI info 161506782 Gene: - Synonym: lhv_0196
SCL: @Intracellular Length 225 COG -
Species: Lactobacillus_helveticus_DPC_4571 Location 198069..198746 Strand: -
Product: DNA polymerase
Sequence:
MKKGFKSGQVIQSVTLGTDTSNQSAIANTTFGGDSTVYHITNETSSKGKTRSSEEWVNMNNVYINGRDTWYKADLEKLTGHSYADLTDAIMNNHLITNPS
SDLIKAYKLKRNKNTYTLTAKTIDKALMKKAAEPIFDTTPQSTGQAKVFKQMQKFGKYKSMTVKAVVKNNKLATFNIFVNMKLGKMMTVKVGQSYGNFGS
HDFLKVPTNATNAKNLPTTDNKKKK


This is a pseudogene


Protein clustering result of GI: 161506782
protein GI: 161506782 is in cluster LaCOG99064
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG99064 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG99064
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes
58336525Lactobacillus_acidophilus_NCFMmklkkaiigisfaavfllsgcssqqkkadpvlnkdqvvqkaRKsFKSGQVIQSVTLaTDT
161506782Lactobacillus_helveticus_DPC_4571----------------------------------------mKKgFKSGQVIQSVTLgTDT
 
58336525Lactobacillus_acidophilus_NCFMSSQSAIANTTFGGESTVYHITNQTTSKGKTsSSEEWVNLNNVYINGRDTWYKADLEKLTG
161506782Lactobacillus_helveticus_DPC_4571SNQSAIANTTFGGDSTVYHITNETSSKGKTrSSEEWVNMNNVYINGRDTWYKADLEKLTG
 
58336525Lactobacillus_acidophilus_NCFMHSYAELTDAIMNNHfIlNPSdkLVKAYKMKRNKqTYTLnAKitDKALMKKAAsPIFNTva
161506782Lactobacillus_helveticus_DPC_4571HSYADLTDAIMNNHlItNPSsdLIKAYKLKRNKnTYTLtAKtiDKALMKKAAePIFDTtp
 
58336525Lactobacillus_acidophilus_NCFMQSanQAKtFKQIQKYGKYKdMTVKAVVKNNRLSTFNIFVNMKLGKLMTVKVGQSYGNFGS
161506782Lactobacillus_helveticus_DPC_4571QStgQAKvFKQMQKFGKYKsMTVKAVVKNNKLATFNIFVNMKLGKMMTVKVGQSYGNFGS
 
58336525Lactobacillus_acidophilus_NCFMHDFLKVPTSATNAKpLPaTNNKKK-
161506782Lactobacillus_helveticus_DPC_4571HDFLKVPTNATNAKnLPtTDNKKKk
 
Copyright © 2010 Miaomiao Zhou
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