LAB-Secretome DB


LAB-Secretome DB A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Protein

GI:15673675
NCBI info	15673675	Gene:	yrdB	Synonym:	L131958
SCL:	@C-terminally anchored (with CS)	Length	204	COG	-
Species:	Lactococcus_lactis_lactis_IL1403	Location	1748664..1749278	Strand:	+
Product:	hypothetical protein
Sequence:	MNKKTLISSLLITLAFLFLNVQKVSAAIDYNLFNYNYPVSAYYPKSSDKANVMGRIIKINNVRNDYSVSIPMDVSQNSEGKLNYFGLTTSTNAYFTHDSG NSITNAGSLTGPNTLVGPGLQNPVKLPIPSSTITIDGQTYYFNYYVVQVVTEKVISPINEVQGNNYALQPLDTLYQQMPTSLGHIILIALVLSFIIKRKM VQNY

This pseudogene can be concatenated as : 15673675_30024052

Concatenated Sequence:

MNKKTLISSLLITLAFLFLNVQKVSAAIDYNLFNYNYPVSAYYPKSSDKANVMGRIIKINNVRNDYSVSIPMDVSQNSEGKLNYFGLTTSTNAYFTHDSG
NSITNAGSLTGPNTLVGPGLQNPVKLPIPSSTITIDGQTYYFNYYVVQVVTEKVISPINEVQGNNYALQPLDTLYQQMPTSLGHIILIALVLSFIIKRKM
VQNYxLCSATFRHTLPANANFAWAYYSDSPGAIIHYKTEDGTELLTSPTLIGESGDTIPSEVRDFTGYTLVSVPEEDSFKKAQLTNLTYVYRKNPVAAAT
VTVKYIDTQGNSISDSIPLSGNVDQEYTTEQKIISGYTFKEVQGNKSGLFSTTPQTVTYIYTKNPIEIKTGTVTIKYVDTNGNSISDEITKSGNVGSLYT
SEQKKILGYNFKEIQGIAEGQFTIESQTVTYVYTKISTPTIIKTSVIPPKTLSVKTLPKESLPETGDKFFGFTLLSGSLLILVSTTLYLLKSRKYK

Protein clustering result of GI: 15673675

protein GI: 15673675 is in cluster LaCOG00885
Species	GI	Gene	Synonym	NC	Product	Sub cellular Location	Length	In original LaCOG

Color Legend:

Corrected sequence

Pseudo gene

Protein Domain structure of LaCOG00885 (Scale up the web page to see more details)

View this figure in PNG format

Multiple Sequence alignment of LaCOG00885

Color Legend:

Corrected sequence

Pseudo gene

Gene made from mutiple pseudogenes


116491465	Oenococcus_oeni_PSU-1	MflkkgKK----KLYKsgknW------vAALllsaavLsfys--AglnQqtASaatssqt
90961291	Lactobacillus_salivarius_UCC118	MsrnnlnRklkysIrKkkngggaalfivgsVVlgGLmLggat-tvnADEvtqTgTgTdTs
116332797	Lactobacillus_brevis_ATCC_367	-------------MYKkgklW-miagvftAtVmmGLmggqpaqaAttttsdATTTeTvTp
116495772	Lactobacillus_casei_ATCC_334	MqafsnEKsqH-KMYKagtlW------vAALIgvGIcVgg--------------------
191639262	Lactobacillus_casei_BL23	MqafsnEKsqH-KMYKagtlW------vAALIgvGIcVgg--------------------
28379043	Lactobacillus_plantarum_WCFS1	---mtgDsvyrvKMYKdgkrW---vyagAttlalaagLvfanvnASADtaaSSdatTeqv
28377769	Lactobacillus_plantarum_WCFS1	----mkpnnvnnQnkrhqsrW--vitsatAMIlttLtIasqa--AAADDtvtTTTnepTn
28379535	Lactobacillus_plantarum_WCFS1	-------mnkrkiItnnppkW-hlitgiAAtIlasIiLtnqdafAAtDsttApTTtapTv
15673283	Lactococcus_lactis_lactis_IL1403	------------mkkihlnkWkhktslylmLfclsLpLaltplsvSAtEketeSeqTapt
15673185_999990002	Lactococcus_lactis_lactis_IL1403	------------mIiKnkmvkrlistflmsLllasMmLviga------------------
15673675_30024052	Lactococcus_lactis_lactis_IL1403	------------mnkKt----------lissllitLaflf--------------------

116491465	Oenococcus_oeni_PSU-1	kavSydkiTnkqtVnySAyvNeNnrNdglySApaltdv-------------------Asm
90961291	Lactobacillus_salivarius_UCC118	AksSgStdiSgTEValSspsNgkpaaSTaaATestAdattsak--------------NkT
116332797	Lactobacillus_brevis_ATCC_367	AkatateqfSaaatpaStasSaitpNSaatSAaqSATq-------------------AaT
116495772	Lactobacillus_casei_ATCC_334	---------------------------------------------------------Sqi
191639262	Lactobacillus_casei_BL23	---------------------------------------------------------Sqi
28379043	Lactobacillus_plantarum_WCFS1	SsaAsSaaTSsTatssaAtdasSasSTatsTSstAss--------------------TaT
28377769	Lactobacillus_plantarum_WCFS1	SQlntntqvnaTQVnlkAdtStSvstiksdqSavAAT--------------------SpT
28379535	Lactobacillus_plantarum_WCFS1	qQtAptnplSgsQVtltsttgsSatgSTttSSpvAtstaampvkstatsgslmsamaStS
15673283	Lactococcus_lactis_lactis_IL1403	SQkdaSetTSeTQtveSstnDqNqnNSTislpesSsT--------------------Tsl
15673185_999990002	Lactococcus_lactis_lactis_IL1403	---------------------------------------------------------gnv
15673675_30024052	Lactococcus_lactis_lactis_IL1403	---------------------------------------------------------lnv

116491465	Oenococcus_oeni_PSU-1	tStGSAkSlNghLvmv--------------------------------------------
90961291	Lactobacillus_salivarius_UCC118	QpktSATSeStpaiTaggatSegntdTSatTndgnnavTaqptaaevAknvsiTnvSlnk
116332797	Lactobacillus_brevis_ATCC_367	sSaapviSkTaSavTp--------------------------------------------
116495772	Lactobacillus_casei_ATCC_334	QSvaaSTShihSVvTn--------------------------------------------
191639262	Lactobacillus_casei_BL23	QSvaaSTShihSVvTn--------------------------------------------
28379043	Lactobacillus_plantarum_WCFS1	tSssaASStAsSavTsttsaAsssAeTvsATTp---------------------------
28377769	Lactobacillus_plantarum_WCFS1	tStGSpSehSsSVnTnpqqqSanPASqSqATTtsestPTtdikhPtqtapaqtTsaSTt-
28379535	Lactobacillus_plantarum_WCFS1	atsGhAaepSsSVteaastnNliPtSaAmAssattKyPTdttatPnaSssltsaEsSTpn
15673283	Lactococcus_lactis_lactis_IL1403	apseSlTSdSkkLaqk--------------------------------------------
15673185_999990002	Lactococcus_lactis_lactis_IL1403	yaqGSvSStSlqVsad--------------------------------------------
15673675_30024052	Lactococcus_lactis_lactis_IL1403	QkvsaAidyNlfnyny--------------------------------------------

116491465	Oenococcus_oeni_PSU-1	--------------------------------------------sEidtTkrasTgvSyq
90961291	Lactobacillus_salivarius_UCC118	svVreSKgTdlTitfdweakglhkgdtMevpMfEgfdSitkqVdfpvmsdGlkmgtlTld
116332797	Lactobacillus_brevis_ATCC_367	---------------------------------------------DStATnsTsTpaSaa
116495772	Lactobacillus_casei_ATCC_334	------------------------------------------------ATGTTPTn----
191639262	Lactobacillus_casei_BL23	------------------------------------------------ATGTTPTn----
28379043	Lactobacillus_plantarum_WCFS1	--------------------------------------------asSdATsTStatvAat
28377769	Lactobacillus_plantarum_WCFS1	--------------------------------------------epTtesnTesatdSqa
28379535	Lactobacillus_plantarum_WCFS1	kaMstSQqTvsSgvihsttpassasmpVptsVaEtasAaapsVtnsTaAnsTaPTsvmtt
15673283	Lactococcus_lactis_lactis_IL1403	--------------------------------------------eEvvAstTvaepkAaa
15673185_999990002	Lactococcus_lactis_lactis_IL1403	------------------------------------------------------------
15673675_30024052	Lactococcus_lactis_lactis_IL1403	------------------------------------------------------------

116491465	Oenococcus_oeni_PSU-1	yAkiTdnnkSyw--------------------------vdlrAlndSAqitSTqtvnfqa
90961291	Lactobacillus_salivarius_UCC118	ydArkinvnftadldpdKlyrgqmkigTfvsrDyfKnLnnetAvqitlpdgTTvkqpltv
116332797	Lactobacillus_brevis_ATCC_367	psSvAs--------------------------------vssaAAidATkvATpvsAa