LAB-Secretome DB


LAB-Secretome DB A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Protein

GI:15673474
NCBI info	15673474	Gene:	ypcD	Synonym:	L122924
SCL:	@Lipid anchored	Length	546	COG	-
Species:	Lactococcus_lactis_lactis_IL1403	Location	1523176..1524816	Strand:	-
Product:	endo-beta-N-acetylglucosaminidase
Sequence:	MKKSKKFFIRICLSTGILASATLLTACFGTPAKHVKANYKVTAEAIPDYQSKNAPISSYWMPDKFLEWSAENDKDLVYNQSRVPLTKRISPDKLSPSNQN QNKKTKIVALSMMNSQTSGNPSRGTTKFESYTFDYWQYIDTLVYWGGSSGEGIIVTPSADVIDEAHSNGVPVLGTIFLPPKEYGGKVDWVKTMLKKDEQG QYPFASQMVKVAKTYGFEGWFINEETQGLNADDAANMKALIQQVKKEDSSLQIMWYDAMTKDGKVDWQNQLNDQNATFVQDKAADAMFLNFWWTQNNLAD QKLLEKSNLYAKNHNIDPYNIYAGIDVQAKDVQTPVKWNLLEKGNQATQTSIGLYAASATYTNASNWDDFQNRESAFWVNQKADPRQVDHSVNESWTGLS KYVLEKSAISGNEFNTNFNLGNGYNYFKAGQKISEMDWNDRSLAGILPSYRWIIDNEGKNKISPSFDFANAYNGGNSLKFMAEHLDAGKSSNITLFASDL KIAMGAKFSVSMRSDQALKVSAILELANGQKVSIAGDKSLTENWSK

This pseudogene can be concatenated as : 15673474_15673473

Concatenated Sequence:

MKKSKKFFIRICLSTGILASATLLTACFGTPAKHVKANYKVTAEAIPDYQSKNAPISSYWMPDKFLEWSAENDKDLVYNQSRVPLTKRISPDKLSPSNQN
QNKKTKIVALSMMNSQTSGNPSRGTTKFESYTFDYWQYIDTLVYWGGSSGEGIIVTPSADVIDEAHSNGVPVLGTIFLPPKEYGGKVDWVKTMLKKDEQG
QYPFASQMVKVAKTYGFEGWFINEETQGLNADDAANMKALIQQVKKEDSSLQIMWYDAMTKDGKVDWQNQLNDQNATFVQDKAADAMFLNFWWTQNNLAD
QKLLEKSNLYAKNHNIDPYNIYAGIDVQAKDVQTPVKWNLLEKGNQATQTSIGLYAASATYTNASNWDDFQNRESAFWVNQKADPRQVDHSVNESWTGLS
KYVLEKSAISGNEFNTNFNLGNGYNYFKAGQKISEMDWNDRSLAGILPSYRWIIDNEGKNKISPSFDFANAYNGGNSLKFMAEHLDAGKSSNITLFASDL
KIAMGAKFSVSMRSDQALKVSAILELANGQKVSIAGDKSLTENWSKxMTLTNGQKVAPIALSDAKVTDEAFEEEGTVGGFRLSWKSDANKNNFSTYEIYQ
LNDDGSKEFLGASNINAFFVNALKRGKNINSTKFEIVPINKAGESGHSVTTSVKWPDNSLAKAAFVADKTLVTIGEKVTLMNQSNLASVKYKWDIDGASP
ATSTEKNPQVSFDKAGSYSVKLTVINEKGQEDSVTQTELITVIDQPVELTNFALNQSVQVDSFTNESESGPKAVDGKLNTKWCAVGPGKHNITIDIGKSE
KINQVLIDHAQKGGESPDMNTSDYTIEISKDNQNWTEVVNVKKNKLGETKDSFKQTEARYVRITATKPTQGADTAVRLYEIQVLGQKKS

Protein clustering result of GI: 15673474

protein GI: 15673474 is in cluster LaCOG02614
Species	GI	Gene	Synonym	NC	Product	Sub cellular Location	Length	In original LaCOG

Color Legend:

Corrected sequence

Pseudo gene

Protein Domain structure of LaCOG02614 (Scale up the web page to see more details)

View this figure in PNG format

Multiple Sequence alignment of LaCOG02614

Color Legend:

Corrected sequence

Pseudo gene

Gene made from mutiple pseudogenes


15673474_15673473	Lactococcus_lactis_lactis_IL1403	MKksKkfFIricLStgILaSAtlLtACfgtpAkhvKaNYKvTAEAipDyqskNaPiSsYW
28377122	Lactobacillus_plantarum_WCFS1	MRhgQyrYIvgtLA--LItTAvgLvACskqsAnq-QiSYRqTAEAtlDkgmdNqPeApYW

15673474_15673473	Lactococcus_lactis_lactis_IL1403	mPdKfLEWsaenDKdlvYNqSrVPLtKRIspdKLspsNQnQNkKtKIVALSMMNSqTSGN
28377122	Lactobacillus_plantarum_WCFS1	fPkQlLKWqlskDKaakYNtAsVPLaKRIdkwQLptvNKtQDpKmKVVALSIMNSsTSGN

15673474_15673473	Lactococcus_lactis_lactis_IL1403	psRGttkFESytFdyWQYIDtLVYWGGSSGEGIIVtPSADVIDeAHsNGVPVLGTIFlPp
28377122	Lactobacillus_plantarum_WCFS1	apRGintFDAnvFsnWQYIDqLVYWGGSAGEGLIVpPTADVIDsAHkNGVPVLGTVFfPq

15673474_15673473	Lactococcus_lactis_lactis_IL1403	keyGGKVdWVktmLKKDeqGqYPfAsQMVkVAKtYGFEGWFINEETq-------------
28377122	Lactobacillus_plantarum_WCFS1	vvsGGKLkWLndfLKQDadGhFPmAdKLVaVAKaYGFDGWFINQETdpevksfdsastgk

15673474_15673473	Lactococcus_lactis_lactis_IL1403	--------GLNaddAanMKaLIQQvK-KedSsLqIMWYDAMTKDGKVDWQNqLndQNaTF
28377122	Lactobacillus_plantarum_WCFS1	tatsstsnGLSkkhAqlMQqLIKEyKqKagSkLdLMWYDSMTKDGKMDWQNaLtkENqSY

15673474_15673473	Lactococcus_lactis_lactis_IL1403	VqD----kaADAMFLNFWWTQnnLAdQKLLEKSNlyAKnhnIdPYNIYAGIDVQAkdvqT
28377122	Lactobacillus_plantarum_WCFS1	LvDanmkpvADSMFLNFWWTKkrLAsQELLKKSHerAEklgIsPYNLFAGIDVQAdgtaT

15673474_15673473	Lactococcus_lactis_lactis_IL1403	PVKWNLlekgnqatqTSIGLYAasaTYtNAsnwDDFQnREsAfWVNqKaDP-RqVdhSvN
28377122	Lactobacillus_plantarum_WCFS1	PVRWNLfankqhvpyTSLGLYApdwTHaSSdtvDEFQaKEgAlWVNdQnDPsRsIpsTtS

15673474_15673473	Lactococcus_lactis_lactis_IL1403	esWtGLSkYvLEKSAISgneFnTNFNLGNGYNYFkaGQkISemDWNDRSLagIlPSYRWI
28377122	Lactobacillus_plantarum_WCFS1	thWpGVStYaVEQSAITkqpFvTNFSLGNGYNYFikGKnVSlrDWNNRSLqaVnPTYRWL

15673474_15673473	Lactococcus_lactis_lactis_IL1403	IDNegkNkIspSFDFaNAYnGGNsLKfMAehLdagkSSnItLFaSDLkIamgaKfSVSmR
28377122	Lactobacillus_plantarum_WCFS1	INNgngNaLkaSFDYtDAYeGGNdIK-LAgkMrkdtAStIkLYtTDLdVtadtQvSLTaK

15673474_15673473	Lactococcus_lactis_lactis_IL1403	SdqalkvsaILeLaNGQkvSIAGDKSLTENWSkx--------------------------
28377122	Lactobacillus_plantarum_WCFS1	AsgkstaklVVtLkDGRtkTIAGDRTLSKHWTtvsydvsqltkktikglslkisaaetda

15673474_15673473	Lactococcus_lactis_lactis_IL1403	--------MtLTngQKvAPiaLSdakVtDeaFEEEGtvgGfrLSWKSdanKNnfstYEIY
28377122	Lactobacillus_plantarum_WCFS1	sysvqlgrLaITgkQQaAPkkVNqvtIdNrtFDEEGkyaGvnLSWQA-ttKNkldhYEIY

15673474_15673473	Lactococcus_lactis_lactis_IL1403	QLNDDGSKeFLGASNinaFFVNALKRgkniNsTkfeIVPI---NKaGESghsVTtsVKWP
28377122	Lactobacillus_plantarum_WCFS1	QVNNDGSRsFLGATNttnFYLNALKRngqhNeTnlmVVPVdiwNQrGDAsdqVT--LKWP

15673474_15673473	Lactococcus_lactis_lactis_IL1403	DNslaKAAFvaDKTLvtiGekVtlmNqSNlaSvkYKWDiDGASpaTSTeKNPqVSFdKAG
28377122	Lactobacillus_plantarum_WCFS1	DNrkpKAAFtvNRTLaapGntIkftNaSSknAtsYKWEfDGATktTSTaKNPtVTYrKAG

15673474_15673473	Lactococcus_lactis_lactis_IL1403	SYSVkLTviNEkGQedsVTqtELITVidQ-pveLTnfAlNqsvqvdsFTNeSESgpkAVD
28377122	Lactobacillus_plantarum_WCFS1	TYNVtLTakNKdGQrh-VTmkKLITItpKaqgaLTllSkNaktsasgYTNsSEApkmAVD

15673474_15673473	Lactococcus_lactis_lactis_IL1403	GKLNTKWCAvGpgkHnITIDIGKsekINqVlIdHAQkGGEspDMNTsdYTIEISkDnQnW
28377122	Lactobacillus_plantarum_WCFS1	GKLDTKWCAtGkapHtLTLDLGRqttVSaVkLaHAKaGGEgaDMNTraWTIQVStDgKrY

15673474_15673473	Lactococcus_lactis_lactis_IL1403	TEVvnvkkNklgeTkDSFkqTeARYVRItatKPTQgADTAVRLYEIqVLGqkKS--
28377122	Lactobacillus_plantarum_WCFS1	TDVartynNtqatSlNTFaaTsARYVRLvvdKPTQvADTAVRIYEMdVLGltQTlk