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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:15673335
NCBI info 15673335 Gene: ynjB Synonym: L190756
SCL: @N-terminally anchored (No CS) Length 108 COG -
Species: Lactococcus_lactis_lactis_IL1403 Location 1391010..1391336 Strand: -
Product: hypothetical protein,pseudogene cscA
Sequence:
MPERIIKGKYEAQVDNKTARYKYQWTFDQEFTISDNQAQKLNDSDPTVKKEKDWTWRLFVIGILLLVLFLIILLWKRRKKSQKEEEEKQALREKIEAQEK
IIDDLNKK


This pseudogene can be concatenated as : 15673336_15673335
Concatenated Sequence:
MKKLQLFLSAIFLTLSFGLAQTGYARTDDYTVKPIIPENQSNKDLGYFDILLGADKEQTLQVELSNNTEQEIKIDVTLSSAVTNMTGLVVYEPTEIVADS
SLKYNLKDYVNTPKVVTLPPLTRQKLDLKVKMPNEAFDGQIAGGITFSKEGQNDKEEDSEGITVKNTYSYTIALLMRQNDNEVSPDLKLKTVSPSQINGR
NVINVNLQNPTMTYINTMNVKATISGISNTDIKYTYSNSMMQMAPNTSFDLPIPTSNQSAATRVSEPLKPGKYRLQLVVNARTDNQRKIxMPERIIKGKY
EAQVDNKTARYKYQWTFDQEFTISDNQAQKLNDSDPTVKKEKDWTWRLFVIGILLLVLFLIILLWKRRKKSQKEEEEKQALREKIEAQEKIIDDLNKK


Protein clustering result of GI: 15673335
protein GI: 15673335 is in cluster LACOG00915
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene

Copyright © 2010 Miaomiao Zhou
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