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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:125624403
NCBI info 125624403 Gene: - Synonym: llmg_1602
SCL: @Intracellular Length 276 COG -
Species: Lactococcus_lactis_cremoris_MG1363 Location 1574963..1575793 Strand: -
Product: putative transcriptional regulator
Sequence: 
MLLFLVLLIGAVGGKVYFDVKTAVTKAYVNPPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAAMNPRLQQTTVINLSTSALLPDNQSLLTLYNS
GGEAAVIKEMENLLQVKTNKFIRIDLDQMGELVQAIGGVSIQNANEFTAQGFKFPQGTVALNNTKEVAAYFTRLNTGDTKKAFARQQEVVMAVIGKLKSP
LLLIRHYGQILTVFPKVFKTTFNFGNVKALALNYHGAISIKKINIHSSKVAGQSEVTAISQANLDLAKEQFQESLK


This is a pseudogene


Protein clustering result of GI: 125624403
protein GI: 125624403 is in cluster LaCOG02514
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG02514 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG02514
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


15672910Lactococcus_lactis_lactis_IL1403MvKSRVAENgrqIKRGnKKKKRkvLKIfLfVLLFfiiilGAVGGKVYFDlKTAVTKAYVN


116511745_999990006Lactococcus_lactis_cremoris_SK11MsKSRIAENdshLKRGaKKKKRptLKIiLaVLLFLVLLIGAVGGKVYFDVKTAVTKAYVN


125624403Lactococcus_lactis_cremoris_MG1363------------------------------mLLFLVLLIGAVGGKVYFDVKTAVTKAYVN


 


15672910Lactococcus_lactis_lactis_IL1403PPTQMTSiSLKKKEpFTTAILGISKIDGKDVLVSAnlAATNPRLQQTTVINLSTSAiLPD


116511745_999990006Lactococcus_lactis_cremoris_SK11PPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAATNPRLQQTTVINLSTSALLPD


125624403Lactococcus_lactis_cremoris_MG1363PPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAAmNPRLQQTTVINLSTSALLPD


 


15672910Lactococcus_lactis_lactis_IL1403kQtLLTLYNSkGEAAVIKEMEKLLQVKiNKFVgrnfDQMGELVQAIGGVSIQNANEFsAQ


116511745_999990006Lactococcus_lactis_cremoris_SK11NQSLLTLYNSGGEAAVIKEMEKLLQVKTNKFVRiDLDQMGELVQAIGGVSIQNANEFTAQ


125624403Lactococcus_lactis_cremoris_MG1363NQSLLTLYNSGGEAAVIKEMEnLLQVKTNKFiRiDLDQMGELVQAIGGVSIQNANEFTAQ


 


15672910Lactococcus_lactis_lactis_IL1403GFKFPQGTVALNkaeEVAAYFTlLNaGDTKKAFarQQEVVMAVvSKLKSPrvLIRHYGQI


116511745_999990006Lactococcus_lactis_cremoris_SK11GFKFPQGTVALNNTKEVAAYFTRLNTGDTKKilhvskklxMAVISKLKSPlLLIRHYGQI


125624403Lactococcus_lactis_cremoris_MG1363GFKFPQGTVALNNTKEVAAYFTRLNTGDTKKAFarQQEVVMAVIgKLKSPlLLIRHYGQI


 


15672910Lactococcus_lactis_lactis_IL1403LTaFPKVFKTsFNFGNVKALALNYnGAIrIKKINvrSSKVAGQSEVTAISQsNLDLAKiQ


116511745_999990006Lactococcus_lactis_cremoris_SK11LTVFPKVFKTTFNFGNVKALALNYHGAISIKKINIHSSKVAGQSEVTAISQANLDLAKeQ


125624403Lactococcus_lactis_cremoris_MG1363LTVFPKVFKTTFNFGNVKALALNYHGAISIKKINIHSSKVAGQSEVTAISQANLDLAKeQ


 


15672910Lactococcus_lactis_lactis_IL1403FQESLK


116511745_999990006Lactococcus_lactis_cremoris_SK11FQESLK


125624403Lactococcus_lactis_cremoris_MG1363FQESLK






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
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