LAB-Secretome DB


LAB-Secretome DB A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Protein

GI:125622892
NCBI info	125622892	Gene:	-	Synonym:	llmg_0010
SCL:	@Intracellular	Length	63	COG	-
Species:	Lactococcus_lactis_cremoris_MG1363	Location	13521..13712	Strand:	+
Product:	hypothetical protein
Sequence:	MVSLGWRAEGIAFYSSTSNETPIYRLYNPNATVGTHFYTQSSAERDSLVRAGWHYEGTAWYGG

This pseudogene can be concatenated as : 125622891_125622892

Concatenated Sequence:

MKEWHGMVLAKNKKIMISTIPLVILSLVCFKENLSAQASTKSLDTGESFTEVYNKDNGFYLNSPFYDISKVSKSVYVGESGTFNQVKVLPIYNMTPKGSV
NFYQNTATNNLIGATLPSLYTGAISLTQAGQYTAQKAGTATVALTYTLSSDFKKELLSKYPDAWTNIAPASYGSPDFMYAKYSNQTFYVTIKEHTVPLYR
MYNPNSGEHFYTENSFERDSLVKAGWNYEGVAExMVSLGWRAEGIAFYSSTSNETPIYRLYNPNATVGTHFYTQSSAERDSLVRAGWHYEGTAWYGG

Protein clustering result of GI: 125622892

protein GI: 125622892 is in cluster LaCOG01500
Species	GI	Gene	Synonym	NC	Product	Sub cellular Location	Length	In original LaCOG

Color Legend:

Corrected sequence

Pseudo gene

Protein Domain structure of LaCOG01500 (Scale up the web page to see more details)

View this figure in PNG format

Multiple Sequence alignment of LaCOG01500

Color Legend:

Corrected sequence

Pseudo gene

Gene made from mutiple pseudogenes


15672201	Lactococcus_lactis_lactis_IL1403	------------------------------------------------------------
125624027	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------
125624026	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------
125624028	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------
116510852	Lactococcus_lactis_cremoris_SK11	------MVLaKNkKIMIsTisLVILSlvCFKENlP-------------AQaSTKSLDTGE
125622891_125622892	Lactococcus_lactis_cremoris_MG1363	mkewhgMVLaKNkKIMIsTipLVILSlvCFKENls-------------AQaSTKSLDTGE
116512116	Lactococcus_lactis_cremoris_SK11	-------mmnKtiKfyllTsaLllfSpnvladsqPfipaggisasnvyqpdgrKmitsan
125624030	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------

15672201	Lactococcus_lactis_lactis_IL1403	------------------------------------MkLkksH---iipliLFsgLlIak
125624027	Lactococcus_lactis_cremoris_MG1363	------------------------------------MNthrtHkklFkNGlLFgaLlLGi
125624026	Lactococcus_lactis_cremoris_MG1363	------------------------------------MNIYtsHqkllkNGlLFgaLlLGl
125624028	Lactococcus_lactis_cremoris_MG1363	------------------------------------MNthrtHqklFkNGlLFgaLlLGl
116510852	Lactococcus_lactis_cremoris_SK11	SF----------------------------------teVYNKdNGfYlNspfYdiskvsk
125622891_125622892	Lactococcus_lactis_cremoris_MG1363	SF----------------------------------teVYNKdNGfYlNspfYdiskvsk
116512116	Lactococcus_lactis_cremoris_SK11	qFpyntivyivtvggngtvyyssgviiapntvltadhvIYNRpNGgYiksatvyqanang
125624030	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------

15672201	Lactococcus_lactis_lactis_IL1403	pvfaEEviss--------------------------------------------------
125624027	Lactococcus_lactis_cremoris_MG1363	glsVKEAtPaKAVTAN--------------------------------------------
125624026	Lactococcus_lactis_cremoris_MG1363	glsVKEAtPaKAVTAN--------------------------------------------
125624028	Lactococcus_lactis_cremoris_MG1363	aFsfKEAtPaKAVTAN--------------------------------------------
116510852	Lactococcus_lactis_cremoris_SK11	sFyVgEsgtinqVkvlPiYnMTPKssVNfYQNTaTNNL---------------IGATlPs
125622891_125622892	Lactococcus_lactis_cremoris_MG1363	svyVgEsgtfnqVkvlPiYnMTPKgsVNfYQNTaTNNL---------------IGATlPs
116512116	Lactococcus_lactis_cremoris_SK11	tYnsntAatvtgkvANPdwlakdslitNgYpsnnaddLgilnlskniglstgwmGmTstl
125624030	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------

15672201	Lactococcus_lactis_lactis_IL1403	------------------------------------------------------------
125624027	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------
125624026	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------
125624028	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------
116510852	Lactococcus_lactis_cremoris_SK11	lfTGAIaLTQaGQYTAQKAGTATvaLTYmlSSdFKKElLSKYPD----------------
125622891_125622892	Lactococcus_lactis_cremoris_MG1363	lyTGAISLTQaGQYTAQKAGTATvaLTYtlSSdFKKElLSKYPD----------------
116512116	Lactococcus_lactis_cremoris_SK11	stnqtISLvgfpgdhAgqmwgmsgnisqisnplFnysniSefPgqsgspifntsnnivgi
125624030	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------

15672201	Lactococcus_lactis_lactis_IL1403	-----------------------------------------------dNtPmghyieqeq
125624027	Lactococcus_lactis_cremoris_MG1363	-----------------------------------------------fNgPvYRLYNPNS
125624026	Lactococcus_lactis_cremoris_MG1363	-----------------------------------------------fNgPvYRLYNPNS
125624028	Lactococcus_lactis_cremoris_MG1363	-----------------------------------------------fNgPifRLYNPNS
116510852	Lactococcus_lactis_cremoris_SK11	-----aWTNiAPASYgsPDFMYAKYSNQTFYVTIKE-----------htvPLYRMYNPNS
125622891_125622892	Lactococcus_lactis_cremoris_MG1363	-----aWTNiAPASYgsPDFMYAKYSNQTFYVTIKE-----------htvPLYRMYNPNS
116512116	Lactococcus_lactis_cremoris_SK11	nvadanypNntnpthyvPsslasqYpNygvqlTasninwiqnnvpalkstaLYRvYNPNn
125624030	Lactococcus_lactis_cremoris_MG1363	------------------------------------------------------------

15672201	Lactococcus_lactis_lactis_IL1403	sqeasTEstsdssttpnIrarsfaaVpAsn-----ApsdlKsddntLprkglkiHiYTtd
125624027	Lactococcus_lactis_cremoris_MG1363	GEHVfTmgVaEKNNLvhLG-WgYEGVlgtSYYtmPgqtYgKvpVYRLYskNSGEHlYTiN
125624026	Lactococcus_lactis_cremoris_MG1363	GEHVYTmgLtEKNNLvhLv-WgYEGVlADSYYNYPgiNYiKipVYRLYNsqSGQHlYTkN
125624028	Lactococcus_lactis_cremoris_MG1363	GEHVYTmNLaEKvNLtqLG-WgYEGVlADSYYNYPgvNYtKipVYRLYNsqSGQHlYTkN
116510852	Lactococcus_lactis_cremoris_SK11	GEHfYTENsfERDsLvKaG-WNYEGVaeES----PiktvynqAVYRvYNPNaGDHFYTeN
125622891_125622892	Lactococcus_lactis_cremoris_MG1363	GEHfYTENsfERDsLvKaG-WNYEGVa---------------------------------
116512116	Lactococcus_lactis_cremoris_SK11	GEHLYTKsLyEtttLsKtG-WNYEGVnSqq----PAt---gnAVYRLYNPNSGEHFYkts
125624030	Lactococcus_lactis_cremoris_MG1363	--------MyEtttLsKtG-WNYEGVnSqq----PAt---gnAVYRLYNPNSGKHFYTts

15672201	Lactococcus_lactis_lactis_IL1403	TnEkNvLsKsGWnyEGIvFYaSTss--iEniPvYRLYNsgikq----HlfTtdsnEknvL
125624027	Lactococcus_lactis_cremoris_MG1363	TnEvNqLknyGWvnEGIvFYdaTilPwnQeTtveRLYNPNSgq----HFYTanwdERDyL
125624026	Lactococcus_lactis_cremoris_MG1363	TyEvssLrtkGWsnEGIvFYdSsnCPmastTPvYRLYNPNSgq----HFfTNdfnEsnyL
125624028	Lactococcus_lactis_cremoris_MG1363	TyEvssLrtkGWsnEGIvFYdSsnCPpgsiltvYRrYNPNngq----HFfTNnf------
116510852	Lactococcus_lactis_cremoris_SK11	kaEvahLvslGWraEGIAFYSST----sneTPIYRLYNPNAtvGt--HFYTqSsvERDSL
125622891_125622892	Lactococcus_lactis_cremoris_MG1363	----ExmvslGWraEGIAFYSST----sneTPIYRLYNPNAtvGt--HFYTqSsaERDSL
116512116	Lactococcus_lactis_cremoris_SK11	sfErDsLvKaGWrfEqIAFYSdT----aKhTPIYRLfNPNAkgkQISHFYTSScaERDSL
125624030	Lactococcus_lactis_cremoris_MG1363	sfErDsLvKaGWhyEqIAFYSdT----aKhTPIYRLfNPNAkgkQISHFYTSSsaERDSL

15672201	Lactococcus_lactis_lactis_IL1403	stLGWsYEGiA---------WYGlkS--
125624027	Lactococcus_lactis_cremoris_MG1363	kKIGWkdEGeAFsFtsPepphsGplSPa
125624026	Lactococcus_lactis_cremoris_MG1363	MnLGWNYEGeAFkFnyPyq-WeGkitPl
125624028	Lactococcus_lactis_cremoris_MG1363	----------------------------
116510852	Lactococcus_lactis_cremoris_SK11	VRaGWHYEGtA---------WYGg----
125622891_125622892	Lactococcus_lactis_cremoris_MG1363	VRaGWHYEGtA---------WYGg----
116512116	Lactococcus_lactis_cremoris_SK11	VKIGWrYEqis---------WYGl----
125624030	Lactococcus_lactis_cremoris_MG1363	VKIGWrYEqis---------WYGl----