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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:116513990
NCBI info 116513990 Gene: - Synonym: LBUL_0878
SCL: @Secreted via minor pathways (bacteriocin) (no CS) Length 96 COG -
Species: Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365 Location 815405..815695 Strand: +
Product: hypothetical protein
Sequence: 
MRKISKFLSIVALGLLVGGCSQGQKAKRTKAKTETKTSQNASGDLAKLSQGRDLFAWTVYWDVDKPWQTIQKESQNIDAVGTFATFYDENKNYELF


This pseudogene can be concatenated as : 116513990_116513991
Concatenated Sequence: 
MRKISKFLSIVALGLLVGGCSQGQKAKRTKAKTETKTSQNASGDLAKLSQGRDLFAWTVYWDVDKPWQTIQKESQNIDAVGTFATFYDENKNYELFxMRT
TAKTSKIKRYMTVVNDTRTADKSTDLLETLLASKSKADKHAKEVVALAEKYNFTGVEIDYEQIRDNLSLWKKFLVFEKALYARTKKAGLDLRIVLEPPTP
VSKINFPKGPEYVVMCYNLYGYGTNPGPKADYKFLKKTVKDFSSLGKISYALSNGGFDFNGDEVTSVTGSEALKIKKKYKAKAVRDKKSGALYLKYGSHT
VWYADQTTLQLWAKTLDKASGKKVGISIWRME


Protein clustering result of GI: 116513990
protein GI: 116513990 is in cluster LaCOG99090
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG99090 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG99090
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


104773981Lactobacillus_delbrueckii_bulgaricus_ATCC11842MRKISKFLSIVALGLLVGGCSQGQKAKRTKAKTETKTSQNASGDLAKLSQsRDLFAWTVY


116513990_116513991Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365MRKISKFLSIVALGLLVGGCSQGQKAKRTKAKTETKTSQNASGDLAKLSQgRDLFAWTVY


 


104773981Lactobacillus_delbrueckii_bulgaricus_ATCC11842WDVDKPWQTIQKESQNIDAVGTFAaFYDENKNYELFladgskkldkeMRTTAKTSKIKRY


116513990_116513991Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365WDVDKPWQTIQKESQNIDAVGTFAtFYDENKNYELF----------xMRTTAKTSKIKRY


 


104773981Lactobacillus_delbrueckii_bulgaricus_ATCC11842MTVVNDTRTADKSTDLLETLLASKSKADKHAKEVVALAEKYNFTGVEIDYEQIRDNLSLW


116513990_116513991Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365MTVVNDTRTADKSTDLLETLLASKSKADKHAKEVVALAEKYNFTGVEIDYEQIRDNLSLW


 


104773981Lactobacillus_delbrueckii_bulgaricus_ATCC11842KKFLVFEKALYARTKKAGLDLRIVLEPPTPVSKINFPKGPEYVVMCYNLYGYGTNPGPKA


116513990_116513991Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365KKFLVFEKALYARTKKAGLDLRIVLEPPTPVSKINFPKGPEYVVMCYNLYGYGTNPGPKA


 


104773981Lactobacillus_delbrueckii_bulgaricus_ATCC11842DYKFLKKTVKDFSSLGKISYALSNGGFDFNGDEVTSVTGSEALKIKKKYKAKAVRDKKSG


116513990_116513991Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365DYKFLKKTVKDFSSLGKISYALSNGGFDFNGDEVTSVTGSEALKIKKKYKAKAVRDKKSG


 


104773981Lactobacillus_delbrueckii_bulgaricus_ATCC11842ALYLKYGSHTVWYADQTTLQLWAKTLDKASGKKVGISIWRME


116513990_116513991Lactobacillus_delbrueckii_bulgaricus_ATCC_BAA-365ALYLKYGSHTVWYADQTTLQLWAKTLDKASGKKVGISIWRME






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
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