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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:116512881
NCBI info 116512881 Gene: - Synonym: LACR_2219
SCL: @Intracellular Length 161 COG -
Species: Lactococcus_lactis_cremoris_SK11 Location 2079796..2080281 Strand: +
Product: hypothetical protein
Sequence:
MQKSTDLSHVTLANLKINAPEETIKQEHKELVPNTEYGIIGLDLIPTHGAFKTWWYKGMSDSDSQSFNAISYQKKVAAISITNGYLVQYLTLNSENFNGK
SVSEVSAVFGKHYIIRGAEQSATYLQYIDRVHHLNLIFQLGDSKKVYGIVLYNDKVVSFTP


This is a pseudogene


Protein clustering result of GI: 116512881
protein GI: 116512881 is in cluster LaCOG99152
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG99152 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG99152
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes
116512881Lactococcus_lactis_cremoris_SK11-----------------------------mQKSTDLSHVTLANLKINAPEETIKQEHKEL
125624974Lactococcus_lactis_cremoris_MG1363mkkkkivirllillpillvvllftwhnapwQKSTDLSHVTLANLKINAPEDTIKQEHKEL
 
116512881Lactococcus_lactis_cremoris_SK11VPNTEYGIIGLDLIPTHGAFKTWWYKGMSDSDSQSFNAISYQKKVAAISITNGYLVQYLT
125624974Lactococcus_lactis_cremoris_MG1363VPNTEYGIIGLNLIPTHGAFKTWWYKGMSDSDSQSFNAISYQKKVAAISVTNGYLIQYLT
 
116512881Lactococcus_lactis_cremoris_SK11LNsENFNGKSVSEVSAVFGKHYIIRGAEQSaTYLQYIDRVHHLNLiFQLGDSKKVYGIVL
125624974Lactococcus_lactis_cremoris_MG1363LNgENFNGKSVSEVSAVFGKHYIIRGAEQStTYLKYIDRVHHLNLtFQLGDSKKVYGIVL
 
116512881Lactococcus_lactis_cremoris_SK11YNDKVVSFTP
125624974Lactococcus_lactis_cremoris_MG1363YNDKVVSFTP
 
Copyright © 2010 Miaomiao Zhou
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