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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:116512203
NCBI info 116512203 Gene: - Synonym: LACR_1488
SCL: @N-terminally anchored (No CS) Length 68 COG -
Species: Lactococcus_lactis_cremoris_SK11 Location 1411107..1411313 Strand: -
Product: pseudogene cscA
Sequence:
MNDSDPTVKKEKDWTWLLFILGLMLIILFFFLIIWKRRKKSQKEEEEKQVLREKIEAQEKIIDDLNKK


This pseudogene can be concatenated as : 116512204_116512203
Concatenated Sequence:
MKKLQLFLSSIFIILCFGGAQVAFGQTDDYTVKPIIPENQTNKDLGYFDITLGAGKEQTLQVELSNNTEQEMKIDLALSSAATNINGLVIYEPTEIEADR
SLKYNLKDYVTSPRIVTLAPLTRQKIDIKVKMPNESFDGQIAGGITFSKEGQNDKKEDSEGITVKNTYSYTIALLMKQNENEVSPDLKLTKISPGQINGR
NVINVNLQNPTMAYINTMNVKATIKGITDSDIAYYYSNPMMQMAPNTNFDLPMPTSNQSAATRVSEPLKAGKYRLQLIVNARTDSQENMKRRLIIRMNVI
NISGPLTKNLQFLIIKLKNxMNDSDPTVKKEKDWTWLLFILGLMLIILFFFLIIWKRRKKSQKEEEEKQVLREKIEAQEKIIDDLNKK


Protein clustering result of GI: 116512203
protein GI: 116512203 is in cluster LACOG00915
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene

Copyright © 2010 Miaomiao Zhou
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