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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:116511967 is not in any secretome LaCOG
NCBI info 116511967 Gene: - Synonym: LACR_1231
SCL: @Secretory(released) (with CS) Length 81 COG -
Species: Lactococcus_lactis_cremoris_SK11 Location 1148413..1148658 Strand: +
Product: hypothetical protein
Sequence:
MKRSKCFLYYISEIVIFAILLVLLSQGVQADTKGIVRPSDKYPLGAATMATFYAGENMVINTNYPTNGEFYAGHFYSGTSL


This pseudogene can be concatenated as : 116511967_116511968_116511969_116511970_116511971
Concatenated Sequence:
MKRSKCFLYYISEIVIFAILLVLLSQGVQADTKGIVRPSDKYPLGAATMATFYAGENMVINTNYPTNGEFYAGHFYSGTSLxMGATKADEFTDNQLNSIF
NNNEYKTAFTNKAYKKSNGETAHLEDIDYFKDNGVVNQSSGIQNVTTVSDYYDNLTASTYDSEGNITGYKLAVFNDAIKNLxMDETKTNTGVVAVDIDGK
ANNGIFQNSEEVSINLLNYDSSKQKIPYIILNYHNFNQFNFENTSIFRVSAYTSEQVKRDKPDVNQFYLKDDRLNLSSTKDNAQRYNTASHIINNFNTIT
GGEDSTIQINNDKTDDGFSFLGTLLAPHTNISVNSTTTQGFAGNIVTGRSLYLLSDITADNAFSANFNSDGDFPGTSDLEPDANTPPRILSIDLPDNVSF
SPENATTHxMHRLDGRKVKNTFNIEQPANSSSNLWSRMNDGQWKKYEKEAIAANDQDSAQTTQLSIADVTEDLKTADGKDNYDxMIDQTLYDGGQIDASY
DVDGQQKAFIGQHLLHRNKFSFIVARKEDDLSTMSQEEIDKKYSNTMAVYTLEVHGYLLVNYPKIFDFGTYQLGTSGLANNEFRVAKGQINVENPYYLDW
KLLVKNTTTEIQNNPLLLDSATDFNAQLYNLVSDTDDTWLPGAFVNLGSLKATGEQTMLVLSTEPDNSVDSNWTEV


Copyright © 2010 Miaomiao Zhou
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