spacer
spacer

LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Logo
spacer
Menu
Home
Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
Show all LaCOGs
Search / Browse All
Domain Search
Blast your sequence
spacer
Protein

GI:116511745
NCBI info 116511745 Gene: - Synonym: LACR_0999
SCL: @N-terminally anchored (No CS) Length 219 COG -
Species: Lactococcus_lactis_cremoris_SK11 Location 941432..942091 Strand: +
Product: Transcriptional regulator
Sequence: 
MSKSRIAENDSHLKRGAKKKKRPTLKIILAVLLFLVLLIGAVGGKVYFDVKTAVTKAYVNPPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAAT
NPRLQQTTVINLSTSALLPDNQSLLTLYNSGGEAAVIKEMEKLLQVKTNKFVRIDLDQMGELVQAIGGVSIQNANEFTAQGFKFPQGTVALNNTKEVAAY
FTRLNTGDTKKILHVSKKL


This pseudogene can be concatenated as : 116511745_999990006
Concatenated Sequence: 
MSKSRIAENDSHLKRGAKKKKRPTLKIILAVLLFLVLLIGAVGGKVYFDVKTAVTKAYVNPPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAAT
NPRLQQTTVINLSTSALLPDNQSLLTLYNSGGEAAVIKEMEKLLQVKTNKFVRIDLDQMGELVQAIGGVSIQNANEFTAQGFKFPQGTVALNNTKEVAAY
FTRLNTGDTKKILHVSKKLxMAVISKLKSPLLLIRHYGQILTVFPKVFKTTFNFGNVKALALNYHGAISIKKINIHSSKVAGQSEVTAISQANLDLAKEQ
FQESLK


Protein clustering result of GI: 116511745
protein GI: 116511745 is in cluster LaCOG02514
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG02514 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG02514
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


15672910Lactococcus_lactis_lactis_IL1403MvKSRVAENgrqIKRGnKKKKRkvLKIfLfVLLFfiiilGAVGGKVYFDlKTAVTKAYVN


116511745_999990006Lactococcus_lactis_cremoris_SK11MsKSRIAENdshLKRGaKKKKRptLKIiLaVLLFLVLLIGAVGGKVYFDVKTAVTKAYVN


125624403Lactococcus_lactis_cremoris_MG1363------------------------------mLLFLVLLIGAVGGKVYFDVKTAVTKAYVN


 


15672910Lactococcus_lactis_lactis_IL1403PPTQMTSiSLKKKEpFTTAILGISKIDGKDVLVSAnlAATNPRLQQTTVINLSTSAiLPD


116511745_999990006Lactococcus_lactis_cremoris_SK11PPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAATNPRLQQTTVINLSTSALLPD


125624403Lactococcus_lactis_cremoris_MG1363PPTQMTSVSLKKKEAFTTAILGISKIDGKDVLVSADMAAmNPRLQQTTVINLSTSALLPD


 


15672910Lactococcus_lactis_lactis_IL1403kQtLLTLYNSkGEAAVIKEMEKLLQVKiNKFVgrnfDQMGELVQAIGGVSIQNANEFsAQ


116511745_999990006Lactococcus_lactis_cremoris_SK11NQSLLTLYNSGGEAAVIKEMEKLLQVKTNKFVRiDLDQMGELVQAIGGVSIQNANEFTAQ


125624403Lactococcus_lactis_cremoris_MG1363NQSLLTLYNSGGEAAVIKEMEnLLQVKTNKFiRiDLDQMGELVQAIGGVSIQNANEFTAQ


 


15672910Lactococcus_lactis_lactis_IL1403GFKFPQGTVALNkaeEVAAYFTlLNaGDTKKAFarQQEVVMAVvSKLKSPrvLIRHYGQI


116511745_999990006Lactococcus_lactis_cremoris_SK11GFKFPQGTVALNNTKEVAAYFTRLNTGDTKKilhvskklxMAVISKLKSPlLLIRHYGQI


125624403Lactococcus_lactis_cremoris_MG1363GFKFPQGTVALNNTKEVAAYFTRLNTGDTKKAFarQQEVVMAVIgKLKSPlLLIRHYGQI


 


15672910Lactococcus_lactis_lactis_IL1403LTaFPKVFKTsFNFGNVKALALNYnGAIrIKKINvrSSKVAGQSEVTAISQsNLDLAKiQ


116511745_999990006Lactococcus_lactis_cremoris_SK11LTVFPKVFKTTFNFGNVKALALNYHGAISIKKINIHSSKVAGQSEVTAISQANLDLAKeQ


125624403Lactococcus_lactis_cremoris_MG1363LTVFPKVFKTTFNFGNVKALALNYHGAISIKKINIHSSKVAGQSEVTAISQANLDLAKeQ


 


15672910Lactococcus_lactis_lactis_IL1403FQESLK


116511745_999990006Lactococcus_lactis_cremoris_SK11FQESLK


125624403Lactococcus_lactis_cremoris_MG1363FQESLK






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
		Copyright © 2010 Miaomiao Zhou
		 
		 
	
 
	
 
			 
	 
	spacer