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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:116511569
NCBI info 116511569 Gene: - Synonym: LACR_0809
SCL: @Secretory(released) (with CS) Length 132 COG -
Species: Lactococcus_lactis_cremoris_SK11 Location 753917..754315 Strand: +
Product: hypothetical protein
Sequence: 
LTKRIKLMSILAFALVLIFGFVSQNAFADSRLTIVKYGLIPGASGFSENQTTNDGLKINNLPLDNLGNELSVVSGIHYLVYEISPIGNGSELTATNPPQS
SYRISKEIADLVTDSNGVTSLSVSDGYYLIEK+SNPQKGLLKPALPLVVKLPVTGLNNVYIYPKSSVDKEETISPPQAKPQPKPKPIEVPNAPKKVDDSS
KKVFGLLPKTGVVSSLLLTSYGFALFLIIILLKKHIKNEEEVK


This pseudogene can be concatenated as : 116511569_999990011
Concatenated Sequence: 
LTKRIKLMSILAFALVLIFGFVSQNAFADSRLTIVKYGLIPGASGFSENQTTNDGLKINNLPLDNLGNELSVVSGIHYLVYEISPIGNGSELTATNPPQS
SYRISKEIADLVTDSNGVTSLSVSDGYYLIEK+SNPQKGLLKPALPLVVKLPVTGLNNVYIYPKSSVDKEETISPPQAKPQPKPKPIEVPNAPKKVDDSS
KKVFGLLPKTGVVSSLLLTSYGFALFLIIILLKKHIKNEEEVKxVTGLNNVYIYPKSSVDKEETISPPQAKPQPKPKPIEVPNAPKKVDDSSKKVFGLLP
KTGVVSSLLLTSYGFALFLIIILLKKHIKNEEEVK


This is a corrected sequence


Protein clustering result of GI: 116511569
protein GI: 116511569 is in cluster LaCOG02496
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG02496 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG02496
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


15672742Lactococcus_lactis_lactis_IL1403MTKssKLMgvLivtLlLflGFVSQkAFADSRLiIVKYGLsPGAtGFSENQTTNDGLqINN


116511569Lactococcus_lactis_cremoris_SK11LTKriKLMSILAFALVLIFGFVSQNAFADSRLTIVKYGLiPGASGFSENQTTNDGLKINN


125624589Lactococcus_lactis_cremoris_MG1363-------MSILAFALVLIFGFVSQNAFADSRLTIVKYGLsPGASGFSENQTTNDGLKINN


 


15672742Lactococcus_lactis_lactis_IL1403LPLDNLGNELSVlSGIHYLVYEISPTGdGSELkATNPPpSSYTvlKEvADLaTDSNGVAS


116511569Lactococcus_lactis_cremoris_SK11LPLDNLGNELSVVSGIHYLVYEISPiGnGSELTATNPPQSSYrIsKEIADLVTDSNGVtS


125624589Lactococcus_lactis_cremoris_MG1363LPLDNLGNELSVVSGIHYLVYEISPTGvGSgLTATNPsQtSYTIsKEIADLVTDSNGVAS


 


15672742Lactococcus_lactis_lactis_IL1403LSVSDGYYLIEEQtNPQKGLLKtALPLViKaPVSGLNeVYIYPKSSVDKEkT--gPpnKP


116511569Lactococcus_lactis_cremoris_SK11LSVSDGYYLI-EkSNPQKGLLKPALPLVVKLPVtGLNNVYIYPKSSVDKEETISPPQaKP


125624589Lactococcus_lactis_cremoris_MG1363LSVSeGYYLIEEQSNPQKGLLKPALPLVVKLPVSGLNNVYIYPKSSVDeEETISPPQanP


 


15672742Lactococcus_lactis_lactis_IL1403nPaPKPIEVPkAPKskDDSSKKVFGLLlKTGVaSSLLLTSYGFvLFLIIIcLKKrrKkEE


116511569Lactococcus_lactis_cremoris_SK11QPKPKPIEVPNAPKkvDDSSKKVFGLLPKTGVVSSLLLTSYGFALFLIIIlLKKHiKNEE


125624589Lactococcus_lactis_cremoris_MG1363QPKPKPIEVPNAPKtvDDSSKKVFGLLPKTGVVSSLLLTSYGFALFLIIIfLKKHsKNEE


 


15672742Lactococcus_lactis_lactis_IL1403EVK


116511569Lactococcus_lactis_cremoris_SK11EVK


125624589Lactococcus_lactis_cremoris_MG1363EVK






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
		Copyright © 2010 Miaomiao Zhou
		 
		 
	
 
	
 
			 
	 
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