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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:116511272
NCBI info 116511272 Gene: - Synonym: LACR_0463
SCL: @Intracellular Length 178 COG -
Species: Lactococcus_lactis_cremoris_SK11 Location 435063..435599 Strand: +
Product: hypothetical protein
Sequence: 
MILLVCLGLIFSKSNDRTADKARDIDTILVLGSRINADEQPAKITQERLDAALLLAAKNPQAKIIVSGAKGADEPVSEAFSMKKYLMAHAISADRIISEN
KATDTAENLSYSKKYFHGKTVVVTNDFHLYRALYLASRQGLKVEGYAAKTEVTNPLYYPNYYGHEVLGLIYAFVFGTG


This is a pseudogene


Protein clustering result of GI: 116511272
protein GI: 116511272 is in cluster LaCOG02426
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG02426 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG02426
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


29377330Enterococcus_faecalis_V583-mhwlKItSlsIvsfgfciLliLGLlif--tgkntqptdkpDaILiLGaRvlgtsKetal


15672393Lactococcus_lactis_lactis_IL1403MKKtFKIigaFVglIlLIpvICLaLIlSKStDRTAEnstDIkTILVLGSRINqNkK----


116511272Lactococcus_lactis_cremoris_SK11----------------MIlLVCLGLIFSKSNDRTADkArDIDTILVLGSRINaDEq----


125623301Lactococcus_lactis_cremoris_MG1363MKKfiKflSfFLgaIlLIlLVCLGLIFSKSNDRTADkArEIDTILVLGSRINaDEq----


 


29377330Enterococcus_faecalis_V583PsrvlQaRLDvAipyikqhPetpvIVSGgqGADEPatEAavMKqYLlnkgvpekqIllEN


15672393Lactococcus_lactis_lactis_IL1403PAKITQERLDAALLLAknNPQAKIIVSGAKGADEPVSEAFSMKnYLitHhIrADRIISEd


116511272Lactococcus_lactis_cremoris_SK11PAKITQERLDAALLLAAKNPQAKIIVSGAKGADEPVSEAFSMKKYLMaHaIsADRIISEN


125623301Lactococcus_lactis_cremoris_MG1363PAKITQERLDAALLLAAKNPQAKIIVSGAKGADEPVSEAFSMKKYLMaHaIsADRIISEN


 


29377330Enterococcus_faecalis_V583rATrTkENIvnSqKllsfkrlVIVTsDFHmYRsqlLAKRaGisnVsGitAassfpkdi--


15672393Lactococcus_lactis_lactis_IL1403KAgDTAENIAYSKKYFd-GKTVIVTsDFHLYRALYLAKqEGv-KVEGFAAKTkVnNlLYY


116511272Lactococcus_lactis_cremoris_SK11KATDTAENlSYSKKYFH-GKTVvVTNDFHLYRALYLAsRQGL-KVEGYAAKTEVtNpLYY


125623301Lactococcus_lactis_cremoris_MG1363KATDTAENlSYSKKYFH-GKTVvVTNDFHLYRALYLAsRQGL-KVEGYAAKTEViNpLYY


 


29377330Enterococcus_faecalis_V583-knfGrElLsLgYAllFdw-


15672393Lactococcus_lactis_lactis_IL1403PNYYGHEILGLiYAFVFGkG


116511272Lactococcus_lactis_cremoris_SK11PNYYGHEVLGLiYAFVFGtG


125623301Lactococcus_lactis_cremoris_MG1363PNYYGHEVLGLiYAFVFGtG






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
		Copyright © 2010 Miaomiao Zhou
		 
		 
	
 
	
 
			 
	 
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