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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:116510870
NCBI info 116510870 Gene: - Synonym: LACR_0035
SCL: @Lipid anchored Length 100 COG -
Species: Lactococcus_lactis_cremoris_SK11 Location 34547..34849 Strand: +
Product: hypothetical protein
Sequence:
MKKIILSSFAVFSILLLSACSTNQALKPESSSSKISQNDNSKYDSVISDLKSELADKSEYKWVFKIEHNITNADISKGVMINIAPEKYDDSKELKNTYID


This is a pseudogene


Protein clustering result of GI: 116510870
protein GI: 116510870 is in cluster LaCOG02692
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG02692 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG02692
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes
15673936Lactococcus_lactis_lactis_IL1403MKKIILwSltflvILtLSsC---------------SkNkNSKYDSVISDLKSELAvKgds
116510870Lactococcus_lactis_cremoris_SK11MKKIILsSFAVFsILLLSACSTNQALKPESSSSKISQNDNSKYDSVISDLKSELAdKSE-
125622939Lactococcus_lactis_cremoris_MG1363MKKIILsSFAVFsILLLSACSTNQALKPESSSSKISQNDNSKYDSVISDLKSELAdKSE-
 
15673936Lactococcus_lactis_lactis_IL1403kltfdnYeWsyKvvHNvTNADISKGdMIevyPkKerDSKrLfNinIDsqMGDsyAQSKII
116510870Lactococcus_lactis_cremoris_SK11------YKWvFKIEHNITNADISKGvMINIaPEKYDDSKELkNTYID-------------
125622939Lactococcus_lactis_cremoris_MG1363------YKWvFKIEHNITNADISKGvMINIaPEKYDDSKELkNTYIelgLGDkqSKNKII
 
15673936Lactococcus_lactis_lactis_IL1403VLQKIVSKiAKKLPNDNSEITLGFKSQQKsKrIVPVARSLKSMDAfPIND
116510870Lactococcus_lactis_cremoris_SK11--------------------------------------------------
125622939Lactococcus_lactis_cremoris_MG1363LLQKLVSKaAKKLPDDNSEITLGFKSEQErKgVVPVARSVKSMDAvPIHE
 
Copyright © 2010 Miaomiao Zhou
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