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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:116496112 is not in any secretome LaCOG
NCBI info 116496112 Gene: - Synonym: LSEI_2686
SCL: @LPxTG Cell-wall anchored Length 651 COG -
Species: Lactobacillus_casei_ATCC_334 Location 2673809..2675764 Strand: -
Product: Alpha-glucosidase, family 31 of glycosyl hydrolase
Sequence:
METGKETLANLTLIAEATPATLKQKIYQAVATWVAQVGERYNFYDKPRDYAALNGLKTALHQATAQKDDVSSLNIYGAMDRVMQKTPTHAVGIAMYSNRI
ANFEYGNTENSHAWHTADGMVYLYNNDLNQFGEGYWATVDPYRLPGTTVDTVSLTDGEKSSSKSPQAWVGGATDGTIASVGMALNKANEGQNLQAMKSWF
LLNDQIINLGANINGTTAADIETIIDQRQIDPATTKITVDGQVYTNQKTVSRWANINTTDPENNVGYIIAKGNAPITINQATRTGTYKDINGYFPSDTVY
KHTYATLAAMHGATVKNGSYEYVTVPNATDTKVAQLAQSPDYMVLANTGELQAIKTKDQVMANVWTKADQLDGLVSIDQPAAVIIKALGNNVYQLTAAEP
SQTGNLINFSFNNPVHLQGKTEALFSTNGHVLTFNPADLAGASRAVTFKLDVPVDRTTLAATIKTAGNLKAKDYTKASFATLTQALTEAKAVIANLATDQ
QTVDDANTALVAAIDGLVKTADTKALQAALTAAAKLDAKTYTDASWRDLQAAIDAAKDVLTLDEPTQVMVDHATKAVLTAQKALVKRSQTDPSSKTPPTK
PLPADKNGRHQKTQADMPQTGDKVIQWLSLAGVGMLLLIGGLMIWRKRREQ


This pseudogene can be concatenated as : 116496113_116496112
Concatenated Sequence:
MKKFLVSIGLLGMMVLSTGTVTGYATDDSASAVATPSSATSSSEILKAVNDEPVATEVPVQGAKPIEKAATVTSRAEYVTMRARWRDRLIATKPDMSDPN
VKAYLTDLAAQSQTLWATMDRSANRSRLWLKKSSDTTSADYTSMFTNIKMLTLGYYNPVSQQHQNPEVYQAIIDAIDFMETAKKYNGSYSTGNWWDWQIG
SAQQLDDTLILLYNDLHRQDPEKLVKFVQPLLGYAKDPNIQWPAYTATGANLTDISISVLASGLLLEDDKRVALVQQNLPKAMGLVTAKDGIYADGSFVQ
HTFFPYNGSYGNEMIKGIARVSSTLVGTPWAISEVQFANVFNLIDKGFLQLMVNGRMPSMLSGRSISRAPGTECGNHGVGDWQRDVSQSDLDCRGNASNI
EAENLSGRCHLGCTGGxMETGKETLANLTLIAEATPATLKQKIYQAVATWVAQVGERYNFYDKPRDYAALNGLKTALHQATAQKDDVSSLNIYGAMDRVM
QKTPTHAVGIAMYSNRIANFEYGNTENSHAWHTADGMVYLYNNDLNQFGEGYWATVDPYRLPGTTVDTVSLTDGEKSSSKSPQAWVGGATDGTIASVGMA
LNKANEGQNLQAMKSWFLLNDQIINLGANINGTTAADIETIIDQRQIDPATTKITVDGQVYTNQKTVSRWANINTTDPENNVGYIIAKGNAPITINQATR
TGTYKDINGYFPSDTVYKHTYATLAAMHGATVKNGSYEYVTVPNATDTKVAQLAQSPDYMVLANTGELQAIKTKDQVMANVWTKADQLDGLVSIDQPAAV
IIKALGNNVYQLTAAEPSQTGNLINFSFNNPVHLQGKTEALFSTNGHVLTFNPADLAGASRAVTFKLDVPVDRTTLAATIKTAGNLKAKDYTKASFATLT
QALTEAKAVIANLATDQQTVDDANTALVAAIDGLVKTADTKALQAALTAAAKLDAKTYTDASWRDLQAAIDAAKDVLTLDEPTQVMVDHATKAVLTAQKA
LVKRSQTDPSSKTPPTKPLPADKNGRHQKTQADMPQTGDKVIQWLSLAGVGMLLLIGGLMIWRKRREQ


Copyright © 2010 Miaomiao Zhou
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