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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein

GI:116490647
NCBI info 116490647 Gene: - Synonym: OEOE_0583
SCL: @Intracellular Length 146 COG -
Species: Oenococcus_oeni_PSU-1 Location 560784..561224 Strand: +
Product: hypothetical protein
Sequence: 
MIYKNHQYKKNQVLDKIAERIYRLEFKNRQVKIESVSLNNFHTVTVDYKVRQIILSKVLDKLSASSEKDLAAAEKQTSISDLNQSQIAFLQYILISIHWD
KYFSEYNAASWSKSSFQMIFDPKKQHYLISKKTLQSIQTSEIKNGE


This pseudogene can be concatenated as : 116490646_116490647
Concatenated Sequence: 
MKIDHSKGLFFSATIAVLLLTFFSIFYRFQNRPTLAMAEKDAKSIFSGAVSNNLSEKYLYGGKATSKELYIKKxMIYKNHQYKKNQVLDKIAERIYRLEF
KNRQVKIESVSLNNFHTVTVDYKVRQIILSKVLDKLSASSEKDLAAAEKQTSISDLNQSQIAFLQYILISIHWDKYFSEYNAASWSKSSFQMIFDPKKQH
YLISKKTLQSIQTSEIKNGE


Protein clustering result of GI: 116490647
protein GI: 116490647 is in cluster LaCOG03165
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG03165 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG03165
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes 


116490646_116490647Oenococcus_oeni_PSU-1--------------------mkiDhskgLffsaTIaVLL----LTffsIfYrF-------


116618290Leuconostoc_mesenteroides_ATCC_8293mpeetntkrsrlarnlseqskptNrkvkIltvcSVlVMLlvvsLTvarVvFnFdgisqet


 


116490646_116490647Oenococcus_oeni_PSU-1-----QnrptLAMa--------EKdaKsIfsgavSnnlSEkylygGKAtskelyIkkxMi


116618290Leuconostoc_mesenteroides_ATCC_8293rvktlQkdaaIALqfgltghsdDKrtKqVvhltnTawqTEiatsvGKAwkssakVadsVt


 


116490646_116490647Oenococcus_oeni_PSU-1YknHQYKKnQVLdkIAERiyRlefKNRqvKIesVslNnFHtvtVdYKVrqIiLskvldKL


116618290Leuconostoc_mesenteroides_ATCC_8293FdgHKYQKkQVIsdLSQRyiKtlqRDRnyKItkIryDrYHnakVqYQVtpIdLpagqkKV


 


116490646_116490647Oenococcus_oeni_PSU-1sassEKdLaaaEKqTsiSdLNqsQIafLQYiLISiHWdkyfsEynaaSwSKS-SfqMIFd


116618290Leuconostoc_mesenteroides_ATCC_8293qryvEKqLq--KKsSeaSkLSaeQLrlVEYaMIAeNWqsvlkDdmptSaTRNmTitMLYt


 


116490646_116490647Oenococcus_oeni_PSU-1pK--KqhYlISKKTLqSIqtSeIknge


116618290Leuconostoc_mesenteroides_ATCC_8293hEnfKpiYqVSKQTLnNIlnSgLse--






 



            
            
							 
				
 
				
 
						 
			
 
			
 
		
 
		
 
				 
	
 
	
 
	
 
	
 
		
		Copyright © 2010 Miaomiao Zhou
		 
		 
	
 
	
 
			 
	 
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