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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific LaCOGs
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Protein


GI:116490646
NCBI info 116490646 Gene: - Synonym: OEOE_0582
SCL: @N-terminally anchored (with CS) Length 73 COG -
Species: Oenococcus_oeni_PSU-1 Location 560524..560745 Strand: +
Product: hypothetical protein
Sequence:
MKIDHSKGLFFSATIAVLLLTFFSIFYRFQNRPTLAMAEKDAKSIFSGAVSNNLSEKYLYGGKATSKELYIKK


This pseudogene can be concatenated as : 116490646_116490647
Concatenated Sequence:
MKIDHSKGLFFSATIAVLLLTFFSIFYRFQNRPTLAMAEKDAKSIFSGAVSNNLSEKYLYGGKATSKELYIKKxMIYKNHQYKKNQVLDKIAERIYRLEF
KNRQVKIESVSLNNFHTVTVDYKVRQIILSKVLDKLSASSEKDLAAAEKQTSISDLNQSQIAFLQYILISIHWDKYFSEYNAASWSKSSFQMIFDPKKQH
YLISKKTLQSIQTSEIKNGE


Protein clustering result of GI: 116490646
protein GI: 116490646 is in cluster LaCOG03165
Species GI Gene Synonym NC Product Sub cellular Location Length In original LaCOG
Color Legend:Corrected sequence Pseudo gene


Protein Domain structure of LaCOG03165 (Scale up the web page to see more details)
View this figure in PNG format




Multiple Sequence alignment of LaCOG03165
Color Legend: Corrected sequence Pseudo gene Gene made from mutiple pseudogenes
116490646_116490647Oenococcus_oeni_PSU-1--------------------mkiDhskgLffsaTIaVLL----LTffsIfYrF-------
116618290Leuconostoc_mesenteroides_ATCC_8293mpeetntkrsrlarnlseqskptNrkvkIltvcSVlVMLlvvsLTvarVvFnFdgisqet
 
116490646_116490647Oenococcus_oeni_PSU-1-----QnrptLAMa--------EKdaKsIfsgavSnnlSEkylygGKAtskelyIkkxMi
116618290Leuconostoc_mesenteroides_ATCC_8293rvktlQkdaaIALqfgltghsdDKrtKqVvhltnTawqTEiatsvGKAwkssakVadsVt
 
116490646_116490647Oenococcus_oeni_PSU-1YknHQYKKnQVLdkIAERiyRlefKNRqvKIesVslNnFHtvtVdYKVrqIiLskvldKL
116618290Leuconostoc_mesenteroides_ATCC_8293FdgHKYQKkQVIsdLSQRyiKtlqRDRnyKItkIryDrYHnakVqYQVtpIdLpagqkKV
 
116490646_116490647Oenococcus_oeni_PSU-1sassEKdLaaaEKqTsiSdLNqsQIafLQYiLISiHWdkyfsEynaaSwSKS-SfqMIFd
116618290Leuconostoc_mesenteroides_ATCC_8293qryvEKqLq--KKsSeaSkLSaeQLrlVEYaMIAeNWqsvlkDdmptSaTRNmTitMLYt
 
116490646_116490647Oenococcus_oeni_PSU-1pK--KqhYlISKKTLqSIqtSeIknge
116618290Leuconostoc_mesenteroides_ATCC_8293hEnfKpiYqVSKQTLnNIlnSgLse--
 
Copyright © 2010 Miaomiao Zhou
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