spacer
spacer

LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Logo
spacer
Menu
Home
Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific
Show all LaCOGs
Search / Browse All
Domain Search
Blast your sequence
spacer
Protein with distant homolog in non-LAB species


GI:29375673
NCBI info 29375673 Gene: - Synonym: EF1097
SCL: @N-terminally anchored (with CS) Length 170 COG -
Species: Enterococcus_faecalis_V583 Location 1066074..1066586 Strand: +
Product: hypothetical protein
Sequence:
MELQVTKKAKFFCLAMALLMTLGIFISAGTSVYASDQLEDSEVEAVAKGLEEMYANGVTEDNFKNYVKNNFAQQEISSVEEELNVNISDASTVVQARFNW
NALGSCVANKIKDEFFAMISISAIVKAAQKKAWKELAVTVLRFAKANGLKTNAIIVAGQLALWAVQCGLS


Protein Domain structure of 29375673 (Scale up the web page to see more details)


View this figure in PNG format

Distant Homologs of 29375673 in the non-LAB species
Alignment GI Species Product Length Eval Identities Positives

Show aligned area

222153746Streptococcus uberis 0140Jexported protein 174 6e-080.24 0.47
 KAKFFCLAMALLMTLGIF---ISAGTSVYASDQ--LEDSEVEAVAKGLEEMYANGV--TEDNFK---NYVKNNFAQQEISSVEEELNVNISDASTVVQAR  
 K KF  +   ++    IF    S  ++VYA++   +  +E+E+VA   E+++  G+  + +N+    +Y+ NN+   EI +    ++      +   + +  
 KKKFLKIMTCIIAICSIFPYLSSMASTVYANEDNYVSQTEIESVASEFEQLFTKGIIISGNNYTFNHDYLTNNYTSDEIQAFIHLMDSTDLSPTFSKRRK  

 FNWNALGSCVANKIKDEFFAMISISAIVKAAQKKAWKELAVTVLRFAKANGLKTNAIIVAGQLALWAVQCG  
  +  +   C+ +K   +   M  + A V   Q+KAWKE A   + +   NG+K N    A  L+ + +QC   
 RSIGSFAVCMKDKAVSDIADMFKVGAFVSFVQRKAWKEAAKFAVSWLAKNGIKRNVAATAALLSWYGIQCA  



Copyright © 2010 Miaomiao Zhou
spacer