spacer
spacer

LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Logo
spacer
Menu
Home
Method
Summary of results
Pseudogenes
Ubiquitous LaCOGs
Niche specific LaCOGs
Species specific
Show all LaCOGs
Search / Browse All
Domain Search
Blast your sequence
spacer
Protein with distant homolog in non-LAB species


GI:29374943
NCBI info 29374943 Gene: - Synonym: EF0304
SCL: @Lipid anchored Length 176 COG -
Species: Enterococcus_faecalis_V583 Location 290724..291254 Strand: -
Product: putative lipoprotein
Sequence:
MKKMIKFAGIALIFAALLSACSNAKNNTQKKAETAAQSSTIEASDSNENEPNTENITQAVKQLEEKFNSDEKLVKIDVKNNVKDDTSDNPHAVITVKVIN
DEAKKNMEEMQTAIDSNSGTEAQKTAIYGIQLNVEEVAKTLENDNDVISFITPYTNGNDRTIAKSTKNENIIPLVK


Protein Domain structure of 29374943 (Scale up the web page to see more details)


View this figure in PNG format

Distant Homologs of 29374943 in the non-LAB species
Alignment GI Species Product Length Eval Identities Positives

Show aligned area

157151039Streptococcus gordonii str. Challis substr. CH1putative lipoprotein 175 9e-070.29 0.47
 MKKMIKFAGIALIFAALLSACSNAKNNTQKKAETAAQSSTIEASDSNENEPNTENITQAVKQLEEKFNSDEKLVKIDVKNNVKDDTSDNPHAVITVKVIN  
 MKK+  ++  AL F  L +  + +   T   + +   SS   A  S     + E++   +K + +  N + K   I V+ +VKD+   N H VIT  +    
 MKKISLYSLTALSFIVLAACSAKSTEETSSSSSSEVTSSVSTAKKSKSAGTSQEDVINELKSIFDP-NGNSKDFDIKVEKDVKDEAFPNGHTVITASIKG  

 DEAKKNMEEMQTAIDSNSGTEAQKTAIYGIQLNVEEVAKTLENDNDVISFITPYTNGNDRTIAKSTKNENIIP  
 D A    +EM  A D+N+ TE  K  + G +  + ++A+ L +D   I+F         R IA S K ++IIP  
 DTAA-GTKEMMAAFDNNTATEEDKQILQGFRQTIADIAQKLPDDTTTIAFQYETKPNEYRVIAHSGKTKDIIP  



Copyright © 2010 Miaomiao Zhou
spacer