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LAB-Secretome DB
A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

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Protein with distant homolog in non-LAB species


GI:116492740
NCBI info 116492740 Gene: cscC Synonym: PEPE_0977
SCL: @Secretory(released) (with CS) Length 681 COG -
Species: Pediococcus_pentosaceus_ATCC_25745 Location 986030..988075 Strand: -
Product: hypothetical protein
Sequence:
MKKVKDLLLVAFLVSFCWIATDVKASLKPLSNLENFQWANQAVTPAENTFIMHSGARTKVTPLKGDATTNRLSVDQKINVSQALVENVGFYQGKSVNLLV
TLKRNKSNLKGGSLSFAKDYFFGIDIAGEVMVTYQFVDANQNPLTIKTAFNYFGLNSNKYIGYQDCNSVISAVYANNPTNIRYESEDQWMYLKNTTVGLP
WRDPRQSFEVVTKPIFQVTFVVHNNDSTPSSLVYLTEFLARPESAPAYAESSDFNQANNGVYLAAQQTVPSTNSFTSEVSFNLEHVYNSEQYIPERIKVT
NFDGKDVTQYFDWRIENQKVYIKTRPAATRAITDTTLHYKVYLKWLEAKKTVDPTRVVNGKLDLPFDVSTNINGQAVGKSSAVSTVDYVGRVNVVFLADN
GFEVLRAREVKSGILTTKFDVTDIYPEIAGYIPIKNDAVQDTGTFLPGNKTIIHRYRKGEKLSFKLKNLGDTLYSSRFSNQSKLTVSFTHEDGAKVRLVG
NCAGEKRILKEYSNAAHQVDDEIICQFPKSWINKKVDFYLEDDQHQMSNKETRIIKQERGPELSLPSKIDFGSHEIPLEITVCSLTRAEWVHVKDRSELD
HYPWILKVREEHPLTNQNDQKLISRLYFKGNVINGENQTIGQDTGNLNLDLSQYLQLVLEPTDQIGSYHGELRWTLEDAPN


Protein Domain structure of 116492740 (Scale up the web page to see more details)


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Distant Homologs of 116492740 in the non-LAB species
Alignment GI Species Product Length Eval Identities Positives

Show aligned area

152974521Bacillus cereus subsp. cytotoxis NVH 391-98hypothetical protein Bcer98_0698 860 2e-310.27 0.44
 TDVKASLKPLSNLENFQWANQAVTPAENTFIMHSGARTKVTPLKG-DATTNRLSVDQKINVSQALVENVGFYQGKSVNLLVTLKRNKSNLKGGSLSFAKD  
 + V++   P+     F+ A   V P +N F+    ++TKV    G  +    L VD     +     NVG+Y+GK V L VTL RN S+ +  + + A    
 STVQSQNIPVQQSSYFKDAKTDVIPGDNAFVARFTSKTKVIVSDGIRSKWENLIVDNSHKTAVVTFTNVGYYKGKPVTLKVTL-RNHSSAESWTSTEAYL  

 YFF---GIDIAGE---VMVTYQFVDANQNPLTIKTAFNYFGLNSNKYIGYQDCNSVISAVYANNPTNIRYESEDQWMYLKNTTVGLPWRDPRQSFEVVTK  
 + +   G ++ G    V + Y+F+D   NP  IKT+ NY G+N  KYI  ++ N  IS +YA+  + I+Y+  D   Y  ++ V   + DP Q   + TK  
 FLYLKLGKEVDGSKSSVDMEYEFLDEEGNPFPIKTSLNYQGVNRAKYITIRNFNETISNMYASQDSPIQYDMLDGGAYRFHSDVKEWYGDP-QKLTLTTK  

 PIFQVTFVVHNNDSTPSSLVYLTEFLARPESAPAYAESSDFNQANN-GVYLAAQQTVPSTNS--FTSEVSFNLEHVYNSEQYIPERIKVTNFDGKDVTQY  
  +  +   + N +ST S + YLT+F  + E+    A +  F  AN+  +     QTVP  N   +  ++S+ L       QY   +  V N  GKD + +  
 EVTHLKMHIENRESTESEVRYLTDFFPKVETPKVDAHNQSFQVANDPNISAEFIQTVPYLNQQRYIKQLSY-LFTSNEGNQYAKSKWIVENIHGKDCSNW  

 FDWRIENQ----KVYIKTRPAATRAITDTTLHYKVYLKWLEAKKT-VDPTRV-VNGKLDLPFDVSTNINGQAV-GKSSAVSTVDYVGRVNVVFLADNGFE  
 F +  EN     K+  K          D    +K    ++ ++   VD +R+  N    + F VS +++G     K+S  + V+Y+ +V V  +     +  
 FTFE-ENSDGTTKIAAKPETLNNPNFYDNVYFFKKIYNFVGSETNPVDKSRLKQNSMYPIDFTVSQSVDGNVNHAKASGTTLVNYLSQVQVQHIDKETNQ  

 VLRARE--VKSGILTTKFDVTDIYPEIAGYIPIKNDAVQDTGTFLPGNKTIIHRYRKGEKLSFKLKNLGDTLYSSRFSNQSKLTVSFTHEDGAKVRLVGN  
  +   +  V  GI+T  F V  I  EI GY  +KN  +  TG FLP N+   H Y            +  TL ++ FS  + +    T+ +  K  ++    
 PIPNVQDTVVEGIITDPFRVEPI--EIPGYQVVKNTPI--TGIFLPENQVFTHIYAL----------VKATLEANDFS--TVIGSIPTNPEELKTFILKE  

 CAGEKRILKEYSNAAHQ--VDDEIICQFPKSWINKKVDFYLEDDQHQMSNKETRIIKQERGPEL---SLPSKIDFGSHEIP-LEITVCSLTRAEWVHVKD  
    E   L   ++   Q  VD+  +C    S+              ++ N +  I     G  L    +P  I F +  IP  E TV        + V D  
 AKAEATELPSNTDITSQVEVDNGGLCNQIGSYTVTL----------RVKNVKKTITVNVIGGNLEFIEVPKTIAFENITIPSREKTVNRSNVQGEIVVSD  

 RSELDHYPWILKVREEHPLTNQNDQKLISRLYFKGN----VINGENQTI----GQDTGNLNLDL--SQYLQLVLEPTDQIG---SYHGELRWTLEDAP  
 + E +   W + V++  PLT+     L   L +  N    V+N +N  +      D  N++++   S+ ++L ++P   +    +Y GEL WTL D P  
 KRE-NRKEWSVYVKQAKPLTSNEKDILPDALVYTQNGVDTVLNDQNYLVHSQKSSDYQNVHINWKDSEGIRLKVKPGPNVKVNETYQGELEWTLTDTP  



Copyright © 2010 Miaomiao Zhou
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