https://wiki.cmbi.umcn.nl/wiki/api.php?action=feedcontributions&user=Arthurp&feedformat=atomCMBIwiki - User contributions [en]2024-03-29T12:04:48ZUser contributionsMediaWiki 1.35.8https://wiki.cmbi.umcn.nl/wiki/index.php?title=Gert_Vriend&diff=4119Gert Vriend2022-07-11T12:50:17Z<p>Arthurp: </p>
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<div>'''Authority in the field of bioinformatics and our big boss at the [[CMBI]]. '''<br />
<br />
His catch-phrase: ''Nothing is impossible for a man who doesn't have to do it himself.'' Author of the [[WHAT IF]] program and founder of the [[WHAT IF]]-foundation, is involved in all bioinformatics education at the Radboud University in Nijmegen, loves beer. More information and lists of courses and seminars can be found at [http://swift.cmbi.umcn.nl/gv/ | his own site].</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Main_Page&diff=4009Main Page2015-07-10T12:09:48Z<p>Arthurp: </p>
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<div>'''Welcome at the CMBIwiki, a wiki for bioinformatics.''' <br><br />
This Wiki is filled with bioinformatic keywords and was set up for educational purposes. <br><br />
Any requests, mistakes or comments can be reported by sending an email to Hanka.Venselaar@radboudumc.nl</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_1:_Unix/Linux/Networks&diff=3990Day 1: Unix/Linux/Networks2014-08-28T09:10:27Z<p>Arthurp: </p>
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<div>==Introduction==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Info_20142015.ppt General introduction] to the course program.<br />
<br />
==Networks==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Networks.ppt http://www.cmbi.umcn.nl/edu/Networks.ppt].<br />
<br />
===Exercises===<br />
Make an elementary network analysis by completing the exercises in chapter one of the<br />
[http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
==Unix/Linux==<br />
[http://www.cmbi.umcn.nl/edu/introdux/introdux.ppt http://www.cmbi.umcn.nl/edu/introdux.ppt].<br />
<br />
===Exercises===<br />
An online tutorial on the use of most frequently used *ux commands can be found at<br />
[http://www.ee.surrey.ac.uk/Teaching/Unix/ http://www.ee.surrey.ac.uk/Teaching/Unix/].<br />
Suggestion: for the morning session, work on tutorial 1-6 and 8. Tutorial 7 is for the afternoon session, together with the exercises from chapter two in the [http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
===Supplementary material===<br />
# [http://www.cmbi.umcn.nl/edu/introdux/AAproperties.csv Properties of amino acids]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/sequence.txt A small sequence] for serching restriction site(s). Search for the HindII pattern GT[CT][AG]AC<br />
# [http://www.cmbi.umcn.nl/edu/introdux/Sf9coldb.dx Infrared spectrum] of an Sf9 cell culture<br />
# [http://www.cmbi.umcn.nl/edu/introdux/dx2xy First part of the J-Camp to XY-data pair converter]. To be completed by putting all Y-values in a single column.<br />
# [http://www.cmbi.umcn.nl/edu/introdux/xvals.dat First half of the XY-data pair file], containing the X-values (wavenumbers).</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_1:_Unix/Linux/Networks&diff=3989Day 1: Unix/Linux/Networks2014-08-28T09:02:44Z<p>Arthurp: </p>
<hr />
<div>==Introduction==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Info_20142015.ppt http://www.cmbi.umcn.nl/edu/Info_20142015.ppt].<br />
<br />
==Networks==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Networks.ppt http://www.cmbi.umcn.nl/edu/Networks.ppt].<br />
<br />
===Exercises===<br />
Make an elementary network analysis by completing the exercises in chapter one of the<br />
[http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
==Unix/Linux==<br />
[http://www.cmbi.umcn.nl/edu/introdux/introdux.ppt http://www.cmbi.umcn.nl/edu/introdux.ppt].<br />
<br />
===Exercises===<br />
An online tutorial on the use of most frequently used *ux commands can be found at<br />
[http://www.ee.surrey.ac.uk/Teaching/Unix/ http://www.ee.surrey.ac.uk/Teaching/Unix/].<br />
Suggestion: for the morning session, work on tutorial 1-6 and 8. Tutorial 7 is for the afternoon session, together with the exercises from chapter two in the [http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
===Supplementary material===<br />
# [http://www.cmbi.umcn.nl/edu/introdux/AAproperties.csv Properties of amino acids]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/sequence.txt A small sequence for serching restriction site(s).] Search for the HindII pattern GT[CT][AG]AC<br />
# [http://www.cmbi.umcn.nl/edu/introdux/Sf9coldb.dx Infrared spectrum of an Sf9 cell culture]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/dx2xy First part of the J-Camp to XY-data pair converter. To be completed by putting all Y-values in a single column.]</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_4:_SQL&diff=3988Day 4: SQL2014-08-27T07:25:59Z<p>Arthurp: </p>
<hr />
<div>This course will give an introduction to the use of relational databases. The course will use [http://www.postgresql.org/ PostgreSQL].<br />
<br />
Elementary SQL course slides can be downloaded [http://bamics2.cmbi.ru.nl/lenocil/sqlcourse.pdf here].<br />
<br />
It would be good before attending the course if you got familiar with GNU Bash.</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_4:_SQL&diff=3987Day 4: SQL2014-08-27T07:24:54Z<p>Arthurp: </p>
<hr />
<div>This course will give an introduction to the use of relational databases. The course will use [http://www.postgresql.org/ PostgreSQL].<br />
<p><br />
Elementary SQL course slides can be downloaded [http://bamics2.cmbi.ru.nl/lenocil/sqlcourse.pdf here].<br />
<p><br />
It would be good before attending the course if you got familiar with GNU Bash.</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_1:_Unix/Linux/Networks&diff=3986Day 1: Unix/Linux/Networks2014-08-26T15:07:50Z<p>Arthurp: </p>
<hr />
<div>==Introduction==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Info_20142015.ppt http://www.cmbi.umcn.nl/edu/Info_20142015.ppt].<br />
<br />
==Networks==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Networks.ppt http://www.cmbi.umcn.nl/edu/Networks.ppt].<br />
<br />
===Exercises===<br />
Make an elementary network analysis by completing the exercises in chapter one of the<br />
[http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
==Unix/Linux==<br />
[http://www.cmbi.umcn.nl/edu/introdux/introdux.ppt http://www.cmbi.umcn.nl/edu/introdux.ppt].<br />
<br />
===Exercises===<br />
An online tutorial on the use of most frequently used *ux commands can be found at<br />
[http://www.ee.surrey.ac.uk/Teaching/Unix/ http://www.ee.surrey.ac.uk/Teaching/Unix/].<br />
Suggestion: for the morning session, work on tutorial 1-6 and 8. Tutorial 7 is for the afternoon session, together with the exercises from chapter two in the [http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
===Supplementary material===<br />
# [http://www.cmbi.umcn.nl/edu/introdux/AAproperties.csv Properties of amino acids]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/sequence.txt A small sequence for serching restriction site(s).] Search for the HincII pattern GT[CT][AG]AC<br />
# [http://www.cmbi.umcn.nl/edu/introdux/Sf9coldb.dx Infrared spectrum of an Sf9 cell culture]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/dx2xy First part of the J-Camp to XY-data pair converter. To be completed by putting all Y-values in a single column.]</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_1:_Unix/Linux/Networks&diff=3985Day 1: Unix/Linux/Networks2014-08-26T15:00:13Z<p>Arthurp: </p>
<hr />
<div>==Introduction==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Info_20142015.ppt http://www.cmbi.umcn.nl/edu/Info_20142015.ppt].<br />
<br />
==Networks==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Networks.ppt http://www.cmbi.umcn.nl/edu/Networks.ppt].<br />
<br />
===Exercises===<br />
Make an elementary network analysis by completing the exercises in chapter one of <br />
[http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
==Unix/Linux==<br />
[http://www.cmbi.umcn.nl/edu/introdux/introdux.ppt http://www.cmbi.umcn.nl/edu/introdux.ppt].<br />
<br />
===Exercises===<br />
An online tutorial on the use of most frequently used *ux commands can be found at<br />
[http://www.ee.surrey.ac.uk/Teaching/Unix/ http://www.ee.surrey.ac.uk/Teaching/Unix/].<br />
Suggestion: for the morning session, work on tutorial 1-6 and 8. Tutorial 7 is for the afternoon session, together with the exercises from chapter two in the [http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
===Supplementary material===<br />
# [http://www.cmbi.umcn.nl/edu/introdux/AAproperties.csv Properties of amino acids]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/sequence.txt A small sequence for serching restriction site(s).] Search for the HincII pattern GT[CT][AG]AC<br />
# [http://www.cmbi.umcn.nl/edu/introdux/Sf9coldb.dx Infrared spectrum of an Sf9 cell culture]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/dx2xy First part of the J-Camp to XY-data pair converter. To be completed by putting all Y-values in a single column.]</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_1:_Unix/Linux/Networks&diff=3984Day 1: Unix/Linux/Networks2014-08-26T14:58:11Z<p>Arthurp: </p>
<hr />
<div>==Introduction==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Info_20142015.ppt http://www.cmbi.umcn.nl/edu/Info_20142015.ppt].<br />
<br />
==Networks==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Networks.ppt http://www.cmbi.umcn.nl/edu/Networks.ppt].<br />
<br />
===Exercises===<br />
Make an elementary network analysis by completing the exercises in chapter one of <br />
[http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
==Unix/Linux==<br />
[http://www.cmbi.umcn.nl/edu/introdux/introdux.ppt http://www.cmbi.umcn.nl/edu/introdux.ppt].<br />
<br />
===Exercises===<br />
An online tutorial on the use of most frequently used *ux commands can be found at<br />
[http://www.ee.surrey.ac.uk/Teaching/Unix/ http://www.ee.surrey.ac.uk/Teaching/Unix/].<br />
Suggestion: for the morning session, work on tutorial 1-6 and 8. Tutorial 7 is for the afternoon session, together with the exercises from chapter two in the [http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf course manual].<br />
<br />
===Supplementary material===<br />
# [http://www.cmbi.umcn.nl/edu/introdux/AAproperties.csv Properties of amino acids]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/sequence.txt A small sequence for serching restriction site(s)]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/Sf9coldb.dx Infrared spectrum of an Sf9 cell culture]<br />
# [http://www.cmbi.umcn.nl/edu/introdux/dx2xy First part of the J-Camp to XY-data pair converter. To be completed by putting all Y-values in a single column.]</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_1:_Unix/Linux/Networks&diff=3983Day 1: Unix/Linux/Networks2014-08-26T14:34:22Z<p>Arthurp: </p>
<hr />
<div>==Introduction==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Info_20142015.ppt http://www.cmbi.umcn.nl/edu/Info_20142015.ppt].<br />
<br />
==Networks==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Networks.ppt http://www.cmbi.umcn.nl/edu/Networks.ppt].<br />
<br />
===Exercises===<br />
Make an elementary network analysis by completing the exercises in chapter one of <br />
[http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf http://www.cmbi.umcn.nl/edu/oefenpdf].<br />
<br />
==Unix/Linux==<br />
[http://www.cmbi.umcn.nl/edu/introdux/introdux.ppt http://www.cmbi.umcn.nl/edu/introdux.ppt].<br />
<br />
===Exercises===<br />
An online tutorial on the use of most frequently used *ux commands can be found at<br />
[http://www.ee.surrey.ac.uk/Teaching/Unix/ http://www.ee.surrey.ac.uk/Teaching/Unix/].<br />
Suggestion: for the morning session, work on tutorial 1-6 and 8. Tutorial 7 is for the afternoon session, together with the exercises from chapter two in [http://www.cmbi.umcn.nl/edu/introdux/oefen.pdf http://www.cmbi.umcn.nl/edu/oefen.pdf].</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_1:_Unix/Linux/Networks&diff=3982Day 1: Unix/Linux/Networks2014-08-26T14:17:22Z<p>Arthurp: </p>
<hr />
<div>==Introduction==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Info_20142015.ppt http://www.cmbi.umcn.nl/edu/Info_20142015.ppt].<br />
<br />
==Networks==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Networks.ppt http://www.cmbi.umcn.nl/edu/Networks.ppt].<br />
<br />
==Unix/Linux==<br />
[http://www.cmbi.umcn.nl/edu/introdux/introdux.ppt http://www.cmbi.umcn.nl/edu/introdux.ppt].<br />
<br />
<br />
After the presentation, students are supposed to work through the online tutorial found at [http://www.ee.surrey.ac.uk/Teaching/Unix/ http://www.ee.surrey.ac.uk/Teaching/Unix/].</div>Arthurphttps://wiki.cmbi.umcn.nl/wiki/index.php?title=Day_1:_Unix/Linux/Networks&diff=3981Day 1: Unix/Linux/Networks2014-08-26T12:02:44Z<p>Arthurp: </p>
<hr />
<div>==Introduction==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Info_20142015.pptx http://www.cmbi.umcn.nl/edu/Info_20142015.pptx].<br />
<br />
==Networks==<br />
[http://www.cmbi.umcn.nl/edu/introdux/Networks.ppt http://www.cmbi.umcn.nl/edu/Networks.ppt].<br />
<br />
<br />
After the presentation, students are supposed to work through the online tutorial found at [http://www.ee.surrey.ac.uk/Teaching/Unix/ http://www.ee.surrey.ac.uk/Teaching/Unix/].</div>Arthurp