LAB-Secretome DB


LAB-Secretome DB A comparative analysis of the predicted secretomes of Lactic Acid Bacteria

Protein with distant homolog in non-LAB species

GI:58336403
NCBI info	58336403	Gene:	-	Synonym:	LBA0053
SCL:	@Intracellular	Length	72	COG	-
Species:	Lactobacillus_acidophilus_NCFM	Location	48869..49087	Strand:	-
Product:	hypothetical protein
Sequence:	MLPKNFTMVKATNRDKIATVRSTDMKYNPKINYMTICDGFIVSKNVKAKATNINTDYRYADHNPVRLEFSLK

This is a concatenated pseudogene: 999990012_58336404_58336403

Sequence:

MGILILLAILLITIGCYIGHMQAHYCRIPDHKKLIIGNNQKNELKLHKTYKATTYNVGFGAYNHNFDFLWITVNxMDHGELKNVKKTQGHRGTAVLNSTN
GVIQTMKKQNPDFMFLQEIDTHSTRSHYVNQVKMVENHFQNYDYTFANNFHTAFLAWPLYDPHGSVQSGLLSMSKYKMTSAIRRKYPITSAFISKFTDLD
RCFVIMRFPINNGKYLVMINSHMSAYNKGGKMRKAQMKLISNVMEKEYLAGNYVIVGGDFNHALGKDMLTHFDHQEKIPDWVSILDQKCCLKILLWLKLL
TEIKLLQFVQLTxMLPKNFTMVKATNRDKIATVRSTDMKYNPKINYMTICDGFIVSKNVKAKATNINTDYRYADHNPVRLEFSLK

Protein Domain structure of 58336403 (Scale up the web page to see more details)

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Distant Homologs of 58336403 in the non-LAB species

Alignment	GI	Species	Product	Length	Eval	Identities	Positives
Show aligned area	184155957	Lactobacillus fermentum IFO 3956	hypothetical protein LAF_1481	367	3e-20	0.64	0.79
MLPKNFTMVKATNRDKIATVRSTDMKYNPKINYMTICDGFIVSKNVKAKATNINTDYRYADHNPVRLEFSLK M+ K FTMVKA NR+ + TVRSTD+ Y +NY+T+CDGF+VS NV A ATNINT++ YADHNPV+L F LK MVAKGFTMVKAQNRETVPTVRSTDLAYRSGVNYLTVCDGFLVSNNVTATATNINTNFDYADHNPVKLTFILK
Show aligned area	116496201	Lactobacillus casei ATCC 334	metal-dependent hydrolase	355	1e-06	0.40	0.75
IATVRSTDMKYNPKINYMTICDGFIVSKNVKAKATN-INTDYRYADHNPVRLEFSLK + +VR+ D Y P +++T+ DG+I+S N+KA++ + ++T ++Y+DHNPV L+F L+ VPSVRALDQPYQPGKSFVTLIDGYILSPNIKAESVHVVSTGFQYSDHNPVVLKFQLQ
Show aligned area	191639720	Lactobacillus casei BL23	Endonuclease/exonuclease/phosphatase	355	1e-06	0.40	0.75
IATVRSTDMKYNPKINYMTICDGFIVSKNVKAKATN-INTDYRYADHNPVRLEFSLK + +VR+ D Y P +++T+ DG+I+S N+KA++ + ++T ++Y+DHNPV L+F L+ VPSVRALDQPYQPGKSFVTLIDGYILSPNIKAESVHVVSTGFQYSDHNPVVLKFQLQ
Show aligned area	114799308	Hyphomonas neptunium ATCC 15444	endonuclease/exonuclease/phosphatase family protein	354	3e-04	0.39	0.54
IATVRSTDMKYNPKINYMTICDGFIVSKNVKAKAT-NINTDYRYADHNPVRLEFSL +AT R+ + Y +NY TI DGFI S NV +A ++ + DH PV F L VATTRTNEQPYKSGVNYTTIIDGFIASPNVTVEAVRGLDLGFAITDHQPVVATFRL
Show aligned area	125624386	Lactococcus lactis subsp. cremoris MG1363	endonuclease/exonuclease/phosphatase family protein	352	5e-04	0.44	0.56
LPKNFTMVKATNRDKIATVRSTDMKY---NPKINYMTICDGFIVSKNVK-AKATNINTDYRYADHNPVRLEFSLK L K +V TN TVRS D Y NPK N I DGFIVS N+K K I+ ++ +DH PV ++FSL+ LTKGMRVVAPTN---APTVRSLDFAYHQKNPK-NTFGIIDGFIVSNNIKDLKIQTIDNQFKSSDHQPVLMDFSLE
Show aligned area	49481107	Bacillus thuringiensis serovar konkukian str. 97-27	endonuclease/exonuclease/phosphatase family protein	352	5e-04	0.42	0.51
LPKNFT--MVKATNRDKIATVRSTDMKYNPKINYMTICDGFIVSKNVK-AKATNINTDYRYADHNPVRLEFSLK LPK+FT K + TVR KY N++TI DGFIVS NV+ N + +DHNPV F LK LPKDFTDGGFKWAVDPSVMTVRDDVKKYVEGENFVTIIDGFIVSPNVEIVNVQGKNLKFENSDHNPVSAVFKLK
Show aligned area	153935873	Clostridium botulinum A str. Hall	endonuclease/exonuclease/phosphatase family protein	352	6e-04	0.34	0.55
PKNFTMVKATNRDKIATVRSTDMKYNPKINYMTICDGFIVSKNVKAKATN-INTDYRYADHNPVRLEFSLK P+ F V N + T R+ Y N+ + DGF+VS N++A + + +++ DHNPV++EF LK PEGFKWVADKN---VPTTRTDATPYKKGENFTAVIDGFLVSDNIEATSVKAYSMEFKNTDHNPVKMEFKLK
Show aligned area	153932125	Clostridium botulinum A str. ATCC 19397	endonuclease/exonuclease/phosphatase family protein	352	6e-04	0.34	0.55
PKNFTMVKATNRDKIATVRSTDMKYNPKINYMTICDGFIVSKNVKAKATN-INTDYRYADHNPVRLEFSLK P+ F V N + T R+ Y N+ + DGF+VS N++A + + +++ DHNPV++EF LK PEGFKWVADKN---VPTTRTDATPYKKGENFTAVIDGFLVSDNIEATSVKAYSMEFKNTDHNPVKMEFKLK
Show aligned area	148379821	Clostridium botulinum A str. ATCC 3502	endonuclease/exonuclease/phosphatase family protein	352	6e-04	0.34	0.55
PKNFTMVKATNRDKIATVRSTDMKYNPKINYMTICDGFIVSKNVKAKATN-INTDYRYADHNPVRLEFSLK P+ F V N + T R+ Y N+ + DGF+VS N++A + + +++ DHNPV++EF LK PEGFKWVADKN---VPTTRTDATPYKKGENFTAVIDGFLVSDNIEATSVKAYSMEFKNTDHNPVKMEFKLK
Show aligned area	217077897	Thermosipho africanus TCF52B	endonuclease/Exonuclease/phosphatase family protein	354	7e-04	0.38	0.62
DKIATVRSTDMKYNPKINYMTICDGFIVSKNVKAK-ATNINTDYRYADHNPVRLEFSL + + T RS KY P +++T+ DGF VS N++ NI+ ++ + DHNPV L+ +L NTVPTNRSLKTKYIPGQSFVTVIDGFYVSPNIEIDYVKNIDLNFEFTDHNPVILKITL
Show aligned area	116511761	Lactococcus lactis subsp. cremoris SK11	metal-dependent hydrolase	352	8e-04	0.43	0.56
LPKNFTMVKATNRDKIATVRSTDMKY---NPKINYMTICDGFIVSKNVK-AKATNINTDYRYADHNPVRLEFSLK L K +V TN TVRS D Y NPK N I DGF+VS N+K K I+ ++ +DH PV ++FSL+ LTKGMRVVAPTN---APTVRSLDFAYHQKNPK-NTFGIIDGFLVSNNIKDLKIQTIDNQFKSSDHQPVLMDFSLE
Show aligned area	170755597	Clostridium botulinum B1 str. Okra	endonuclease/exonuclease/phosphatase family protein	352	0.001	0.32	0.55
PKNFTMVKATNRDKIATVRSTDMKYNPKINYMTICDGFIVSKNVKAKATN-INTDYRYADHNPVRLEFSLK P+ F + N + T R+ Y N+ + DGF+VS N++A + + +++ DHNPV++EF LK PEGFKWIADKN---VPTTRTDATPYKKGENFTAVIDGFLVSDNIEATSVKAYSMEFKNTDHNPVKMEFKLK